Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01960 and PS417_01965 overlap by 4 nucleotides PS417_01965 and PS417_01970 overlap by 4 nucleotides PS417_01970 and PS417_01975 are separated by 69 nucleotides
PS417_01960: PS417_01960 - pilus assembly protein, at 436,193 to 436,846
_01960
PS417_01965: PS417_01965 - fimbriae biosynthesis protein, at 436,843 to 437,397
_01965
PS417_01970: PS417_01970 - pilus assembly protein, at 437,394 to 438,353
_01970
PS417_01975: PS417_01975 - pilus assembly protein PilQ, at 438,423 to 439,748
_01975
Position (kb) 437
438
439 Strain fitness (log2 ratio) -2
-1
0
1
2 at 436.536 kb on - strand, within PS417_01960 at 436.536 kb on - strand, within PS417_01960 at 436.617 kb on + strand, within PS417_01960 at 436.617 kb on + strand, within PS417_01960 at 436.618 kb on - strand at 436.618 kb on - strand, within PS417_01960 at 436.862 kb on + strand at 436.862 kb on + strand at 436.863 kb on - strand at 436.903 kb on + strand, within PS417_01965 at 436.907 kb on + strand, within PS417_01965 at 436.907 kb on + strand, within PS417_01965 at 437.453 kb on - strand at 437.517 kb on + strand, within PS417_01970 at 437.517 kb on + strand, within PS417_01970 at 437.518 kb on - strand, within PS417_01970 at 437.950 kb on - strand, within PS417_01970 at 437.980 kb on + strand, within PS417_01970 at 438.181 kb on + strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.338 kb on - strand at 438.448 kb on + strand at 438.479 kb on + strand at 438.495 kb on + strand at 438.496 kb on - strand at 438.816 kb on + strand, within PS417_01975 at 438.816 kb on + strand, within PS417_01975 at 438.816 kb on + strand, within PS417_01975 at 439.209 kb on + strand, within PS417_01975 at 439.210 kb on - strand, within PS417_01975
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 436,536 - PS417_01960 0.52 +1.8 436,536 - PS417_01960 0.52 -0.6 436,617 + PS417_01960 0.65 -0.3 436,617 + PS417_01960 0.65 -1.6 436,618 - -0.6 436,618 - PS417_01960 0.65 +1.3 436,862 + +0.1 436,862 + +0.5 436,863 - -0.2 436,903 + PS417_01965 0.11 -1.7 436,907 + PS417_01965 0.12 +0.4 436,907 + PS417_01965 0.12 +0.3 437,453 - -0.2 437,517 + PS417_01970 0.13 +1.7 437,517 + PS417_01970 0.13 -0.4 437,518 - PS417_01970 0.13 -0.4 437,950 - PS417_01970 0.58 -2.7 437,980 + PS417_01970 0.61 -1.7 438,181 + PS417_01970 0.82 -1.2 438,182 - PS417_01970 0.82 -2.0 438,182 - PS417_01970 0.82 +0.2 438,338 - -0.3 438,448 + -0.7 438,479 + +0.1 438,495 + -0.4 438,496 - -1.6 438,816 + PS417_01975 0.30 +0.5 438,816 + PS417_01975 0.30 -0.3 438,816 + PS417_01975 0.30 -0.2 439,209 + PS417_01975 0.59 -0.3 439,210 - PS417_01975 0.59 -2.0
Or see this region's nucleotide sequence