Strain Fitness in Pseudomonas simiae WCS417 around PS417_19150

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,136,714	-		PS417_19145	0.67	-1.1
4,136,987	+		PS417_19145	0.78	-0.5
4,136,987	+		PS417_19145	0.78	+1.2
4,136,987	+		PS417_19145	0.78	-0.2
4,136,987	+		PS417_19145	0.78	-1.2
4,136,988	-		PS417_19145	0.78	-0.6
4,136,988	-		PS417_19145	0.78	-1.8
4,137,006	+		PS417_19145	0.79	+0.2
4,137,007	-		PS417_19145	0.79	+0.9
4,137,082	+		PS417_19145	0.82	-2.7
4,137,148	+		PS417_19145	0.85	-1.6
4,137,149	-		PS417_19145	0.85	+1.8
4,137,301	+				+0.8
4,137,301	+				+0.4
4,137,302	-				-0.2
4,137,328	+				-1.6
4,137,328	+				+1.4
4,137,341	-				-0.8
4,137,341	-				-1.6
4,137,341	-				+1.0
4,137,341	-				-0.7
4,137,341	-				-1.6
4,137,343	+				-0.4
4,137,343	+				+0.9
4,137,343	+				-3.2
4,137,344	-				-0.3
4,137,391	+				-1.7
4,137,416	-				-1.0
4,137,450	+				-1.1
4,137,451	-				-1.4
4,137,587	-				+1.5
4,137,628	-				+0.6
4,137,699	-				-0.2
4,137,748	+				-1.6
4,137,749	-				+1.5
4,137,749	-				-0.6
4,137,751	+				-0.4
4,137,752	-				+1.8
4,137,752	-				-0.2
4,138,186	+		PS417_19150	0.33	+1.0
4,138,186	+		PS417_19150	0.33	-0.2
4,138,187	-		PS417_19150	0.33	+0.4
4,138,299	-		PS417_19150	0.39	+1.5
4,138,351	-		PS417_19150	0.42	+1.2
4,138,416	+		PS417_19150	0.46	-0.0
4,138,416	+		PS417_19150	0.46	-0.8
4,138,417	-		PS417_19150	0.46	+1.2
4,138,422	+		PS417_19150	0.46	-0.1
4,138,470	+		PS417_19150	0.49	-1.3
4,138,470	+		PS417_19150	0.49	-2.2
4,138,471	-		PS417_19150	0.49	+1.1
4,138,471	-		PS417_19150	0.49	+0.5
4,138,801	-		PS417_19150	0.67	+0.3
4,138,801	-		PS417_19150	0.67	+0.9
4,138,993	-		PS417_19150	0.78	-0.9
4,139,665	+		PS417_19155	0.44	-0.5
4,139,665	+		PS417_19155	0.44	-0.8
4,139,666	-		PS417_19155	0.44	-0.5
4,139,666	-		PS417_19155	0.44	+0.4
4,139,762	-		PS417_19155	0.59	-1.9
4,139,846	-		PS417_19155	0.72	+0.2
4,139,997	+				-1.0
4,139,997	+				-0.3
4,139,998	-				-1.7
4,139,998	-				-1.5
4,140,001	+				+0.2
4,140,001	+				-1.7
4,140,002	-				+1.0
4,140,049	+				-2.2
4,140,049	+				-0.3
4,140,049	+				+2.0
4,140,146	+		PS417_19160	0.13	-1.5
4,140,181	+		PS417_19160	0.17	-0.6
4,140,181	+		PS417_19160	0.17	+0.9
4,140,181	+		PS417_19160	0.17	-1.7
4,140,182	-		PS417_19160	0.17	+0.6
4,140,340	+				+0.3
4,140,340	+		PS417_19160	0.34	-0.5