Strain Fitness in Pseudomonas simiae WCS417 around PS417_18965

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,105,239	+				+2.4
4,105,240	-				+2.2
4,105,240	-				+0.9
4,105,282	-				-0.3
4,105,301	-				+0.4
4,105,310	-				+0.5
4,105,310	-				+0.6
4,105,355	+				+0.0
4,105,444	+				+0.4
4,105,445	-				+1.2
4,105,446	+				+0.4
4,105,446	+				+1.0
4,105,627	-		PS417_18960	0.45	-2.1
4,105,771	-		PS417_18960	0.74	-1.6
4,105,934	+				+2.4
4,105,935	-				-0.5
4,105,938	+				-0.2
4,105,958	+				+1.0
4,105,958	+				+0.7
4,105,959	-				+1.1
4,105,959	-				-0.1
4,105,959	-				-0.8
4,106,354	-		PS417_18965	0.31	-1.0
4,106,520	-		PS417_18965	0.47	-1.2
4,106,878	+		PS417_18965	0.81	-0.4
4,106,879	-				+1.4
4,106,879	-		PS417_18965	0.81	-2.2
4,107,033	-				+0.7
4,107,131	+				+1.0
4,107,156	-		PS417_18970	0.10	+1.5
4,107,158	+		PS417_18970	0.11	+0.5
4,107,159	-				+0.4
4,107,159	-		PS417_18970	0.11	-0.1
4,107,190	+		PS417_18970	0.17	+0.2
4,107,191	-		PS417_18970	0.17	-1.4
4,107,250	-		PS417_18970	0.28	-0.7
4,107,268	+		PS417_18970	0.32	-2.1
4,107,269	-		PS417_18970	0.32	+0.1
4,107,312	+		PS417_18970	0.40	-0.7
4,107,334	+		PS417_18970	0.45	+0.8
4,107,335	-		PS417_18970	0.45	+1.4
4,107,375	-		PS417_18970	0.52	-0.3
4,107,375	-		PS417_18970	0.52	+0.1
4,107,375	-		PS417_18970	0.52	+0.5
4,107,388	+		PS417_18970	0.55	-1.0
4,107,388	+		PS417_18970	0.55	+0.8
4,107,390	+		PS417_18970	0.55	-3.5
4,107,513	+		PS417_18970	0.79	-0.3
4,107,513	+		PS417_18970	0.79	+0.1
4,107,514	-		PS417_18970	0.79	-0.2
4,107,514	-		PS417_18970	0.79	-0.6
4,107,535	+		PS417_18970	0.83	+0.5
4,107,535	+				+2.0
4,107,535	+		PS417_18970	0.83	-1.4
4,107,535	+		PS417_18970	0.83	+0.0
4,107,536	-		PS417_18970	0.83	-1.0
4,107,536	-		PS417_18970	0.83	-0.9
4,107,536	-		PS417_18970	0.83	-0.1
4,107,536	-				-1.0
4,107,558	-		PS417_18970	0.88	+1.0
4,107,580	-				+0.1
4,107,613	-				-0.4
4,107,670	+				-0.2
4,107,671	-				-0.2
4,107,725	+				-2.4
4,107,781	+		PS417_18975	0.11	+0.5
4,107,782	-		PS417_18975	0.11	+0.4
4,107,787	+		PS417_18975	0.11	+0.4
4,107,838	+		PS417_18975	0.15	-0.6
4,107,838	+		PS417_18975	0.15	+0.7
4,107,933	-		PS417_18975	0.22	+0.4