Strain Fitness in Pseudomonas simiae WCS417 around PS417_18625

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,047,300	+		PS417_18620	0.10	+0.6
4,047,301	-				+1.4
4,047,588	-		PS417_18620	0.66	-0.8
4,047,705	+		PS417_18620	0.88	-0.8
4,047,705	+		PS417_18620	0.88	+0.8
4,047,705	+		PS417_18620	0.88	-1.0
4,047,706	-		PS417_18620	0.88	-0.9
4,047,706	-		PS417_18620	0.88	-1.2
4,047,709	+		PS417_18620	0.89	+1.0
4,047,806	-				+1.4
4,047,850	+				-1.0
4,047,851	-				+1.8
4,047,851	-				+2.9
4,047,897	-				+1.9
4,047,917	+				-0.9
4,047,917	+				+1.1
4,047,917	+				+1.4
4,048,036	+				-3.4
4,048,048	+				-0.3
4,048,049	-				-0.1
4,048,087	+				-0.2
4,048,160	-				+1.2
4,048,170	-				+0.4
4,048,253	-				+1.2
4,048,253	-				+0.3
4,048,253	-				+0.2
4,048,333	-				-2.6
4,048,383	+				+0.3
4,048,383	+				-1.2
4,048,383	+				+0.4
4,048,383	+				-2.1
4,048,384	-				-2.0
4,048,384	-				+2.6
4,048,384	-				-2.5
4,048,384	-				+0.5
4,048,384	-				-0.7
4,048,404	+				-1.2
4,048,407	+				-2.2
4,048,407	+				+0.5
4,048,408	-				-2.6
4,048,408	-				-2.5
4,048,408	-				-1.6
4,048,687	+		PS417_18625	0.32	-1.6
4,048,713	+		PS417_18625	0.34	-1.6
4,048,714	-		PS417_18625	0.34	-0.4
4,048,818	+		PS417_18625	0.42	-0.2
4,048,824	+		PS417_18625	0.42	+1.0
4,048,884	+		PS417_18625	0.47	-0.2
4,048,921	-		PS417_18625	0.50	-0.5
4,049,188	+		PS417_18625	0.70	+0.3
4,049,206	-		PS417_18625	0.72	-0.6
4,049,301	+		PS417_18625	0.79	+1.4
4,049,452	-				-1.4
4,049,491	-				+0.2
4,049,633	+				-0.0
4,049,715	-				-1.6
4,049,718	+				-1.6
4,049,885	-				+0.1
4,049,885	-				-0.0
4,050,064	-				-1.7
4,050,102	+				-0.6
4,050,123	+				+4.5
4,050,124	-				+1.1
4,050,124	-				+0.6
4,050,124	-				-1.2
4,050,126	-				+0.3
4,050,127	+				+0.0
4,050,132	-				-1.0
4,050,511	-		PS417_18630	0.38	+0.3