Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18535 and PS417_18540 are separated by 41 nucleotides PS417_18540 and PS417_18545 are separated by 257 nucleotides PS417_18545 and PS417_18550 overlap by 17 nucleotides
PS417_18535: PS417_18535 - amidophosphoribosyltransferase, at 4,024,427 to 4,025,932
_18535
PS417_18540: PS417_18540 - colicin V production CvpA, at 4,025,974 to 4,026,531
_18540
PS417_18545: PS417_18545 - cell division protein, at 4,026,789 to 4,027,451
_18545
PS417_18550: PS417_18550 - folylpolyglutamate synthase, at 4,027,435 to 4,028,742
_18550
Position (kb) 4025
4026
4027 Strain fitness (log2 ratio) -2
-1
0
1 at 4025.976 kb on - strand at 4026.101 kb on - strand, within PS417_18540 at 4026.259 kb on + strand, within PS417_18540 at 4026.260 kb on - strand, within PS417_18540 at 4026.279 kb on - strand, within PS417_18540 at 4026.363 kb on - strand, within PS417_18540 at 4026.523 kb on - strand at 4026.684 kb on + strand at 4026.931 kb on + strand, within PS417_18545 at 4026.938 kb on + strand, within PS417_18545 at 4027.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 4,025,976 - +0.2 4,026,101 - PS417_18540 0.23 -0.7 4,026,259 + PS417_18540 0.51 +0.1 4,026,260 - PS417_18540 0.51 -0.6 4,026,279 - PS417_18540 0.55 -2.6 4,026,363 - PS417_18540 0.70 -2.3 4,026,523 - -0.6 4,026,684 + +1.7 4,026,931 + PS417_18545 0.21 -0.9 4,026,938 + PS417_18545 0.22 -0.5 4,027,430 - -0.2
Or see this region's nucleotide sequence