Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01720 and PS417_01725 are separated by 141 nucleotides PS417_01725 and PS417_01730 are separated by 69 nucleotides
PS417_01720: PS417_01720 - Urocanate hydratase (EC 4.2.1.49) <small>(from data)</small>, at 380,729 to 382,399
_01720
PS417_01725: PS417_01725 - sulfonate ABC transporter substrate-binding protein, at 382,541 to 383,998
_01725
PS417_01730: PS417_01730 - histidine ABC transporter substrate-binding protein, at 384,068 to 385,033
_01730
Position (kb) 382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 381.773 kb on + strand, within PS417_01720 at 381.849 kb on - strand, within PS417_01720 at 382.398 kb on - strand at 382.398 kb on - strand at 382.402 kb on - strand at 382.442 kb on + strand at 382.601 kb on + strand at 382.602 kb on - strand at 382.632 kb on + strand at 382.633 kb on - strand at 382.633 kb on - strand at 382.636 kb on + strand at 382.850 kb on + strand, within PS417_01725 at 382.889 kb on + strand, within PS417_01725 at 382.889 kb on + strand, within PS417_01725 at 382.890 kb on - strand, within PS417_01725 at 382.917 kb on + strand, within PS417_01725 at 383.223 kb on - strand, within PS417_01725 at 383.363 kb on + strand, within PS417_01725 at 383.364 kb on - strand, within PS417_01725 at 383.364 kb on - strand, within PS417_01725 at 383.408 kb on + strand, within PS417_01725 at 383.409 kb on - strand, within PS417_01725 at 383.456 kb on + strand, within PS417_01725 at 383.672 kb on + strand, within PS417_01725 at 383.672 kb on + strand, within PS417_01725 at 383.766 kb on - strand at 383.813 kb on + strand, within PS417_01725 at 383.851 kb on + strand, within PS417_01725 at 383.891 kb on + strand at 383.891 kb on + strand at 383.892 kb on - strand at 383.894 kb on + strand at 383.894 kb on + strand at 383.895 kb on - strand at 383.895 kb on - strand at 383.965 kb on - strand at 384.037 kb on - strand at 384.079 kb on + strand at 384.080 kb on - strand at 384.080 kb on - strand at 384.243 kb on - strand, within PS417_01730 at 384.310 kb on + strand, within PS417_01730 at 384.425 kb on + strand, within PS417_01730 at 384.425 kb on + strand, within PS417_01730 at 384.425 kb on + strand, within PS417_01730 at 384.437 kb on + strand, within PS417_01730 at 384.438 kb on - strand, within PS417_01730 at 384.497 kb on - strand, within PS417_01730 at 384.515 kb on + strand, within PS417_01730 at 384.516 kb on - strand, within PS417_01730 at 384.516 kb on - strand, within PS417_01730 at 384.563 kb on + strand, within PS417_01730 at 384.563 kb on + strand, within PS417_01730 at 384.639 kb on - strand at 384.639 kb on - strand, within PS417_01730 at 384.695 kb on + strand, within PS417_01730 at 384.695 kb on + strand, within PS417_01730 at 384.695 kb on + strand, within PS417_01730 at 384.725 kb on + strand, within PS417_01730 at 384.726 kb on - strand, within PS417_01730
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 381,773 + PS417_01720 0.62 -0.9 381,849 - PS417_01720 0.67 +1.4 382,398 - -1.6 382,398 - +0.4 382,402 - +1.2 382,442 + +0.3 382,601 + -0.2 382,602 - +0.1 382,632 + +3.6 382,633 - -1.1 382,633 - +0.4 382,636 + -0.4 382,850 + PS417_01725 0.21 +1.1 382,889 + PS417_01725 0.24 -1.4 382,889 + PS417_01725 0.24 -3.2 382,890 - PS417_01725 0.24 -2.3 382,917 + PS417_01725 0.26 -0.8 383,223 - PS417_01725 0.47 +0.4 383,363 + PS417_01725 0.56 -0.1 383,364 - PS417_01725 0.56 -2.1 383,364 - PS417_01725 0.56 -2.8 383,408 + PS417_01725 0.59 -0.3 383,409 - PS417_01725 0.60 +0.4 383,456 + PS417_01725 0.63 -0.4 383,672 + PS417_01725 0.78 -0.1 383,672 + PS417_01725 0.78 -2.0 383,766 - -0.6 383,813 + PS417_01725 0.87 -1.8 383,851 + PS417_01725 0.90 -0.4 383,891 + +0.4 383,891 + -1.2 383,892 - +0.1 383,894 + -0.6 383,894 + -2.3 383,895 - +0.2 383,895 - +0.4 383,965 - -0.7 384,037 - -0.2 384,079 + +2.2 384,080 - +0.2 384,080 - -0.6 384,243 - PS417_01730 0.18 +1.9 384,310 + PS417_01730 0.25 -1.0 384,425 + PS417_01730 0.37 -1.4 384,425 + PS417_01730 0.37 +0.6 384,425 + PS417_01730 0.37 +1.9 384,437 + PS417_01730 0.38 +0.3 384,438 - PS417_01730 0.38 +0.4 384,497 - PS417_01730 0.44 +0.1 384,515 + PS417_01730 0.46 -1.0 384,516 - PS417_01730 0.46 +0.7 384,516 - PS417_01730 0.46 +0.3 384,563 + PS417_01730 0.51 +1.6 384,563 + PS417_01730 0.51 -0.8 384,639 - +2.4 384,639 - PS417_01730 0.59 +0.7 384,695 + PS417_01730 0.65 -1.3 384,695 + PS417_01730 0.65 -0.9 384,695 + PS417_01730 0.65 +0.4 384,725 + PS417_01730 0.68 +0.4 384,726 - PS417_01730 0.68 -2.1
Or see this region's nucleotide sequence