Strain Fitness in Pseudomonas simiae WCS417 around PS417_17045

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
3,723,785	+				-2.2
3,723,821	-				+1.5
3,723,824	-				-0.8
3,723,844	+				+1.3
3,723,844	+				-0.1
3,723,853	+				-0.3
3,723,853	+				-0.0
3,723,853	+				+2.3
3,723,854	-				+1.3
3,723,856	+				-2.5
3,723,857	-				-0.3
3,723,857	-				+0.1
3,723,868	+				-1.2
3,723,869	-				-0.5
3,723,894	+				+0.7
3,723,894	+				-1.7
3,723,920	+				-0.7
3,723,963	+		PS417_17040	0.17	-1.3
3,723,963	+		PS417_17040	0.17	-0.6
3,724,002	-		PS417_17040	0.28	-0.4
3,724,002	-		PS417_17040	0.28	-0.8
3,724,002	-		PS417_17040	0.28	+1.0
3,724,127	+		PS417_17040	0.63	-0.2
3,724,184	+		PS417_17040	0.79	-0.8
3,724,184	+		PS417_17040	0.79	-0.3
3,724,185	-		PS417_17040	0.80	+1.5
3,724,279	-				-0.0
3,724,370	+				+0.5
3,724,370	+				+0.5
3,724,371	-				+2.0
3,724,371	-				+1.1
3,724,388	+				-2.5
3,724,601	+				-1.8
3,724,680	+				-0.1
3,724,680	+				-1.5
3,724,681	-				+0.4
3,724,681	-				+1.4
3,724,683	+				+0.1
3,724,684	-				+2.3
3,724,686	-				+0.3
3,724,686	-				+3.0
3,724,704	-				-0.6
3,724,704	-				-2.1
3,724,720	+				+1.0
3,724,721	-				+0.0
3,724,721	-				-0.4
3,724,783	-				+0.4
3,724,783	-				+1.1
3,724,783	-				+0.7
3,724,847	+		PS417_17045	0.11	-1.5
3,724,848	-		PS417_17045	0.11	-0.3
3,724,931	+		PS417_17045	0.18	+0.7
3,725,026	+		PS417_17045	0.26	-0.2
3,725,078	+		PS417_17045	0.31	+0.4
3,725,079	-		PS417_17045	0.31	-0.3
3,725,270	-		PS417_17045	0.48	-0.3
3,725,345	+		PS417_17045	0.54	-0.3
3,725,345	+		PS417_17045	0.54	-1.5
3,725,345	+		PS417_17045	0.54	-2.5
3,725,346	-		PS417_17045	0.54	-0.7
3,725,360	-		PS417_17045	0.55	+0.1
3,725,360	-		PS417_17045	0.55	-1.0
3,725,500	-		PS417_17045	0.68	-1.0
3,725,500	-		PS417_17045	0.68	-0.6
3,725,576	+				+1.7
3,725,654	+		PS417_17045	0.81	-2.7
3,725,654	+		PS417_17045	0.81	+1.9
3,725,654	+		PS417_17045	0.81	-0.6
3,725,655	-				+3.7
3,725,655	-		PS417_17045	0.81	-0.9
3,725,723	+		PS417_17045	0.87	-2.3
3,726,005	+		PS417_17050	0.30	+1.3
3,726,043	+		PS417_17050	0.38	+0.6
3,726,043	+		PS417_17050	0.38	+2.0
3,726,044	-		PS417_17050	0.39	+0.2
3,726,044	-		PS417_17050	0.39	-0.2
3,726,081	-				+0.7
3,726,349	+				-3.1
3,726,415	-				-0.7
3,726,449	+				-1.0
3,726,449	+				-1.0
3,726,450	-				+0.0
3,726,453	-				+0.7
3,726,496	+				-2.0
3,726,499	+				-0.3
3,726,500	-				+0.3
3,726,500	-				+0.5