Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01635 and PS417_01640 overlap by 4 nucleotides PS417_01640 and PS417_01645 are separated by 287 nucleotides PS417_01645 and PS417_01650 are separated by 77 nucleotides
PS417_01635: PS417_01635 - nitrogen regulation protein NR(I), at 358,169 to 359,605
_01635
PS417_01640: PS417_01640 - histidine kinase, at 359,602 to 360,687
_01640
PS417_01645: PS417_01645 - cupin, at 360,975 to 361,400
_01645
PS417_01650: PS417_01650 - chorismate mutase, at 361,478 to 362,014
_01650
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 358.781 kb on + strand, within PS417_01635 at 358.781 kb on + strand, within PS417_01635 at 358.782 kb on - strand, within PS417_01635 at 359.302 kb on - strand, within PS417_01635 at 359.486 kb on + strand at 359.486 kb on + strand at 359.486 kb on + strand at 359.487 kb on - strand at 359.561 kb on - strand at 359.938 kb on - strand, within PS417_01640 at 359.938 kb on - strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.941 kb on + strand, within PS417_01640 at 359.942 kb on - strand, within PS417_01640 at 359.942 kb on - strand, within PS417_01640 at 360.408 kb on - strand, within PS417_01640 at 360.599 kb on + strand at 360.599 kb on + strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.626 kb on - strand at 360.733 kb on + strand at 360.734 kb on - strand at 360.895 kb on + strand at 360.896 kb on - strand at 360.896 kb on - strand at 360.897 kb on + strand at 361.159 kb on + strand, within PS417_01645 at 361.159 kb on + strand, within PS417_01645 at 361.160 kb on - strand, within PS417_01645 at 361.224 kb on + strand, within PS417_01645 at 361.290 kb on - strand, within PS417_01645 at 361.483 kb on + strand at 361.483 kb on + strand at 361.484 kb on - strand at 361.606 kb on + strand, within PS417_01650 at 361.662 kb on - strand, within PS417_01650
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 358,781 + PS417_01635 0.43 +0.8 358,781 + PS417_01635 0.43 -2.5 358,782 - PS417_01635 0.43 +1.0 359,302 - PS417_01635 0.79 +0.1 359,486 + +2.4 359,486 + +1.2 359,486 + +0.2 359,487 - +0.4 359,561 - +2.1 359,938 - PS417_01640 0.31 -1.0 359,938 - PS417_01640 0.31 -3.6 359,941 + PS417_01640 0.31 +0.1 359,941 + PS417_01640 0.31 -1.6 359,941 + PS417_01640 0.31 +0.4 359,942 - PS417_01640 0.31 -0.1 359,942 - PS417_01640 0.31 -3.7 360,408 - PS417_01640 0.74 -2.2 360,599 + -0.0 360,599 + +0.3 360,600 - +1.2 360,600 - -1.4 360,600 - -1.6 360,626 - -0.4 360,733 + -1.8 360,734 - -0.3 360,895 + +2.0 360,896 - -1.2 360,896 - +0.4 360,897 + +0.5 361,159 + PS417_01645 0.43 -0.7 361,159 + PS417_01645 0.43 +1.3 361,160 - PS417_01645 0.43 +1.2 361,224 + PS417_01645 0.58 +0.0 361,290 - PS417_01645 0.74 +2.8 361,483 + -0.5 361,483 + +1.8 361,484 - -1.4 361,606 + PS417_01650 0.24 -2.6 361,662 - PS417_01650 0.34 +0.8
Or see this region's nucleotide sequence