Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01525 and PS417_01530 are separated by 119 nucleotides PS417_01530 and PS417_01535 are separated by 141 nucleotides PS417_01535 and PS417_01540 are separated by 103 nucleotides PS417_01540 and PS417_01545 overlap by 4 nucleotides
PS417_01525: PS417_01525 - membrane protein, at 337,806 to 339,398
_01525
PS417_01530: PS417_01530 - hypothetical protein, at 339,518 to 340,075
_01530
PS417_01535: PS417_01535 - tRNA-Phe, at 340,217 to 340,292
_01535
PS417_01540: PS417_01540 - iron transporter, at 340,396 to 340,668
_01540
PS417_01545: PS417_01545 - adenine glycosylase, at 340,665 to 341,732
_01545
Position (kb) 339
340
341 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 338.745 kb on + strand, within PS417_01525 at 338.745 kb on + strand, within PS417_01525 at 338.746 kb on - strand, within PS417_01525 at 338.746 kb on - strand, within PS417_01525 at 338.746 kb on - strand, within PS417_01525 at 338.746 kb on - strand, within PS417_01525 at 338.748 kb on + strand, within PS417_01525 at 338.748 kb on + strand, within PS417_01525 at 338.749 kb on - strand, within PS417_01525 at 338.790 kb on + strand, within PS417_01525 at 338.882 kb on - strand, within PS417_01525 at 338.882 kb on - strand, within PS417_01525 at 338.882 kb on - strand, within PS417_01525 at 339.053 kb on - strand, within PS417_01525 at 339.158 kb on + strand, within PS417_01525 at 339.193 kb on - strand, within PS417_01525 at 339.193 kb on - strand, within PS417_01525 at 339.226 kb on + strand, within PS417_01525 at 339.227 kb on - strand, within PS417_01525 at 339.231 kb on - strand, within PS417_01525 at 339.415 kb on + strand at 339.451 kb on - strand at 339.451 kb on - strand at 339.489 kb on + strand at 339.529 kb on - strand at 339.595 kb on + strand, within PS417_01530 at 339.680 kb on + strand, within PS417_01530 at 339.681 kb on - strand, within PS417_01530 at 339.845 kb on - strand, within PS417_01530 at 339.892 kb on + strand, within PS417_01530 at 339.920 kb on + strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.932 kb on + strand, within PS417_01530 at 339.932 kb on + strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 340.018 kb on - strand, within PS417_01530 at 340.035 kb on + strand at 340.036 kb on - strand at 340.213 kb on - strand at 340.370 kb on - strand at 340.760 kb on + strand at 340.760 kb on + strand at 340.762 kb on + strand at 340.763 kb on - strand at 340.763 kb on - strand at 340.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 338,745 + PS417_01525 0.59 -1.6 338,745 + PS417_01525 0.59 +0.4 338,746 - PS417_01525 0.59 -0.5 338,746 - PS417_01525 0.59 +0.7 338,746 - PS417_01525 0.59 +0.6 338,746 - PS417_01525 0.59 +1.6 338,748 + PS417_01525 0.59 +1.4 338,748 + PS417_01525 0.59 -0.8 338,749 - PS417_01525 0.59 -0.7 338,790 + PS417_01525 0.62 -0.9 338,882 - PS417_01525 0.68 +0.0 338,882 - PS417_01525 0.68 +0.2 338,882 - PS417_01525 0.68 +1.7 339,053 - PS417_01525 0.78 -1.3 339,158 + PS417_01525 0.85 -0.4 339,193 - PS417_01525 0.87 -0.6 339,193 - PS417_01525 0.87 +0.1 339,226 + PS417_01525 0.89 -1.2 339,227 - PS417_01525 0.89 -1.6 339,231 - PS417_01525 0.89 -0.6 339,415 + +2.9 339,451 - -2.7 339,451 - +0.6 339,489 + +0.8 339,529 - -2.4 339,595 + PS417_01530 0.14 -1.7 339,680 + PS417_01530 0.29 -0.7 339,681 - PS417_01530 0.29 -0.3 339,845 - PS417_01530 0.59 -0.1 339,892 + PS417_01530 0.67 -1.0 339,920 + PS417_01530 0.72 +0.7 339,930 - PS417_01530 0.74 -0.7 339,930 - PS417_01530 0.74 -0.2 339,930 - PS417_01530 0.74 +0.1 339,932 + PS417_01530 0.74 +0.2 339,932 + PS417_01530 0.74 -0.1 339,933 - PS417_01530 0.74 -2.8 339,933 - PS417_01530 0.74 -1.1 339,933 - PS417_01530 0.74 -0.3 340,018 - PS417_01530 0.90 +0.8 340,035 + -0.9 340,036 - +1.2 340,213 - -2.5 340,370 - -0.4 340,760 + -2.4 340,760 + -0.6 340,762 + -0.3 340,763 - +1.1 340,763 - +0.2 340,763 - -0.7
Or see this region's nucleotide sequence