Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01330 and PS417_01335 are separated by 151 nucleotides PS417_01335 and PS417_01340 are separated by 121 nucleotides
PS417_01330: PS417_01330 - dTDP-glucose 4,6-dehydratase, at 287,741 to 288,823
_01330
PS417_01335: PS417_01335 - hypothetical protein, at 288,975 to 291,875
_01335
PS417_01340: PS417_01340 - agmatine deiminase, at 291,997 to 293,103
_01340
Position (kb) 288
289
290
291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 288.868 kb on + strand at 288.868 kb on + strand at 288.869 kb on - strand at 288.945 kb on + strand at 288.946 kb on - strand at 288.946 kb on - strand at 288.946 kb on - strand at 289.009 kb on + strand at 289.063 kb on - strand at 289.114 kb on - strand at 289.114 kb on - strand at 289.114 kb on - strand at 289.209 kb on - strand at 289.314 kb on + strand, within PS417_01335 at 289.315 kb on - strand, within PS417_01335 at 289.315 kb on - strand, within PS417_01335 at 289.951 kb on + strand, within PS417_01335 at 289.951 kb on + strand, within PS417_01335 at 289.952 kb on - strand, within PS417_01335 at 290.288 kb on + strand, within PS417_01335 at 290.321 kb on - strand, within PS417_01335 at 290.321 kb on - strand, within PS417_01335 at 290.646 kb on + strand, within PS417_01335 at 290.715 kb on + strand, within PS417_01335 at 291.136 kb on - strand, within PS417_01335 at 291.216 kb on + strand, within PS417_01335 at 291.217 kb on - strand, within PS417_01335 at 291.267 kb on + strand, within PS417_01335 at 291.268 kb on - strand, within PS417_01335 at 291.332 kb on + strand, within PS417_01335 at 291.386 kb on + strand, within PS417_01335 at 291.386 kb on + strand, within PS417_01335 at 291.387 kb on - strand, within PS417_01335 at 291.387 kb on - strand at 291.387 kb on - strand, within PS417_01335 at 291.435 kb on - strand, within PS417_01335 at 291.475 kb on - strand, within PS417_01335 at 291.871 kb on + strand at 291.873 kb on + strand at 291.873 kb on + strand at 291.874 kb on - strand at 291.874 kb on - strand at 292.723 kb on + strand, within PS417_01340 at 292.723 kb on + strand, within PS417_01340 at 292.724 kb on - strand, within PS417_01340 at 292.798 kb on - strand, within PS417_01340 at 292.798 kb on - strand, within PS417_01340 at 292.822 kb on + strand, within PS417_01340
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 288,868 + -2.8 288,868 + -0.6 288,869 - +2.3 288,945 + -0.6 288,946 - -1.1 288,946 - +0.2 288,946 - +0.0 289,009 + +1.4 289,063 - +0.6 289,114 - +3.0 289,114 - +1.3 289,114 - -3.3 289,209 - +0.5 289,314 + PS417_01335 0.12 +1.7 289,315 - PS417_01335 0.12 -0.9 289,315 - PS417_01335 0.12 +1.2 289,951 + PS417_01335 0.34 -0.1 289,951 + PS417_01335 0.34 +2.0 289,952 - PS417_01335 0.34 -3.4 290,288 + PS417_01335 0.45 +1.8 290,321 - PS417_01335 0.46 +0.1 290,321 - PS417_01335 0.46 +0.3 290,646 + PS417_01335 0.58 +0.4 290,715 + PS417_01335 0.60 +1.4 291,136 - PS417_01335 0.74 -1.1 291,216 + PS417_01335 0.77 +0.2 291,217 - PS417_01335 0.77 -0.2 291,267 + PS417_01335 0.79 -3.3 291,268 - PS417_01335 0.79 +2.1 291,332 + PS417_01335 0.81 -0.4 291,386 + PS417_01335 0.83 -0.1 291,386 + PS417_01335 0.83 -0.8 291,387 - PS417_01335 0.83 -0.0 291,387 - +1.4 291,387 - PS417_01335 0.83 +3.4 291,435 - PS417_01335 0.85 -0.9 291,475 - PS417_01335 0.86 +0.1 291,871 + +0.9 291,873 + -0.8 291,873 + -0.9 291,874 - +0.3 291,874 - -3.4 292,723 + PS417_01340 0.66 +0.4 292,723 + PS417_01340 0.66 +1.5 292,724 - PS417_01340 0.66 -1.2 292,798 - PS417_01340 0.72 +0.4 292,798 - PS417_01340 0.72 +2.0 292,822 + PS417_01340 0.75 -3.1
Or see this region's nucleotide sequence