Strain Fitness in Pseudomonas simiae WCS417 around PS417_11455
Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | JP1 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,464,536 | + | -0.6 | |||
2,464,654 | + | PS417_11450 | 0.12 | +1.4 | |
2,464,655 | - | PS417_11450 | 0.12 | +0.3 | |
2,464,679 | + | PS417_11450 | 0.15 | +0.6 | |
2,464,814 | + | PS417_11450 | 0.32 | -0.9 | |
2,464,815 | - | PS417_11450 | 0.32 | +0.7 | |
2,464,896 | + | PS417_11450 | 0.43 | +1.3 | |
2,464,897 | - | PS417_11450 | 0.43 | +1.2 | |
2,465,318 | + | +1.0 | |||
2,465,422 | + | -1.1 | |||
2,465,423 | - | -2.3 | |||
2,465,544 | + | +0.6 | |||
2,465,544 | + | +0.3 | |||
2,465,760 | + | PS417_11455 | 0.19 | -1.6 | |
2,465,761 | - | PS417_11455 | 0.20 | +0.6 | |
2,466,013 | + | PS417_11455 | 0.36 | -2.8 | |
2,466,014 | - | PS417_11455 | 0.36 | -0.7 | |
2,466,109 | - | PS417_11455 | 0.42 | -1.0 | |
2,466,214 | - | PS417_11455 | 0.49 | -0.3 | |
2,466,543 | - | PS417_11455 | 0.70 | -0.8 | |
2,467,011 | + | +0.0 | |||
2,467,350 | + | PS417_11460 | 0.23 | -0.7 | |
2,467,351 | - | PS417_11460 | 0.23 | +0.3 | |
2,467,351 | - | PS417_11460 | 0.23 | +0.0 | |
2,467,351 | - | PS417_11460 | 0.23 | +0.2 | |
2,467,745 | + | PS417_11460 | 0.52 | +3.1 | |
2,467,746 | - | PS417_11460 | 0.52 | +0.1 |
Or see this region's nucleotide sequence