Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01095 and PS417_01100 are separated by 3 nucleotides PS417_01100 and PS417_01105 overlap by 1 nucleotides PS417_01105 and PS417_01110 are separated by 175 nucleotides
PS417_01095: PS417_01095 - amino acid ABC transporter ATP-binding protein, at 240,309 to 241,055
_01095
PS417_01100: PS417_01100 - amino acid ABC transporter permease, at 241,059 to 241,724
_01100
PS417_01105: PS417_01105 - cystine transporter subunit, at 241,724 to 242,518
_01105
PS417_01110: PS417_01110 - cysteine desulfhydrase, at 242,694 to 243,686
_01110
Position (kb) 241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 240.061 kb on + strand at 240.062 kb on - strand at 240.062 kb on - strand at 240.176 kb on + strand at 240.202 kb on - strand at 240.245 kb on - strand at 240.263 kb on + strand at 240.282 kb on + strand at 240.567 kb on + strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095 at 241.138 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.499 kb on - strand, within PS417_01100 at 241.501 kb on + strand, within PS417_01100 at 241.502 kb on - strand, within PS417_01100 at 241.552 kb on + strand, within PS417_01100 at 241.749 kb on + strand at 241.995 kb on + strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.044 kb on - strand, within PS417_01105 at 242.371 kb on - strand, within PS417_01105 at 242.512 kb on + strand at 242.513 kb on - strand at 242.539 kb on - strand at 242.615 kb on + strand at 242.617 kb on + strand at 242.617 kb on + strand at 242.618 kb on - strand at 242.710 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 240,061 + +0.6 240,062 - -0.0 240,062 - +2.0 240,176 + -1.1 240,202 - -0.5 240,245 - -0.0 240,263 + +1.6 240,282 + +3.0 240,567 + PS417_01095 0.35 -1.7 240,568 - PS417_01095 0.35 -1.5 240,568 - PS417_01095 0.35 -0.3 241,138 + PS417_01100 0.12 -0.8 241,159 + PS417_01100 0.15 -0.3 241,159 + PS417_01100 0.15 +2.2 241,159 + PS417_01100 0.15 -1.4 241,160 - PS417_01100 0.15 -2.0 241,160 - PS417_01100 0.15 +0.5 241,160 - PS417_01100 0.15 +0.2 241,499 - PS417_01100 0.66 +1.0 241,501 + PS417_01100 0.66 +0.0 241,502 - PS417_01100 0.67 -3.3 241,552 + PS417_01100 0.74 -1.2 241,749 + -1.2 241,995 + PS417_01105 0.34 +0.6 241,996 - PS417_01105 0.34 -0.5 241,996 - PS417_01105 0.34 -1.2 241,996 - PS417_01105 0.34 -0.7 242,043 + PS417_01105 0.40 +2.4 242,043 + PS417_01105 0.40 +1.0 242,043 + PS417_01105 0.40 -0.5 242,044 - PS417_01105 0.40 +1.5 242,371 - PS417_01105 0.81 -0.6 242,512 + -1.0 242,513 - +0.5 242,539 - -3.3 242,615 + -0.8 242,617 + +0.1 242,617 + +2.5 242,618 - +0.6 242,710 + +0.2
Or see this region's nucleotide sequence