Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01035 and PS417_01040 are separated by 121 nucleotides PS417_01040 and PS417_01045 overlap by 4 nucleotides
PS417_01035: PS417_01035 - ATP-binding protein, at 224,898 to 226,058
_01035
PS417_01040: PS417_01040 - RND transporter, at 226,180 to 227,262
_01040
PS417_01045: PS417_01045 - RND transporter, at 227,259 to 228,329
_01045
Position (kb) 226
227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 225.184 kb on + strand, within PS417_01035 at 225.553 kb on + strand, within PS417_01035 at 225.553 kb on + strand, within PS417_01035 at 225.554 kb on - strand, within PS417_01035 at 225.554 kb on - strand, within PS417_01035 at 226.110 kb on + strand at 226.125 kb on + strand at 226.126 kb on - strand at 226.339 kb on - strand, within PS417_01040 at 226.542 kb on - strand, within PS417_01040 at 226.570 kb on + strand, within PS417_01040 at 226.570 kb on + strand, within PS417_01040 at 226.570 kb on + strand, within PS417_01040 at 226.571 kb on - strand, within PS417_01040 at 226.746 kb on - strand, within PS417_01040 at 226.811 kb on - strand, within PS417_01040 at 226.811 kb on - strand, within PS417_01040 at 226.811 kb on - strand, within PS417_01040 at 226.929 kb on + strand, within PS417_01040 at 227.583 kb on + strand, within PS417_01045 at 227.583 kb on + strand, within PS417_01045 at 227.583 kb on + strand, within PS417_01045 at 227.584 kb on - strand, within PS417_01045 at 227.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 225,184 + PS417_01035 0.25 -0.7 225,553 + PS417_01035 0.56 -1.1 225,553 + PS417_01035 0.56 -2.5 225,554 - PS417_01035 0.57 -0.7 225,554 - PS417_01035 0.57 -0.5 226,110 + -1.1 226,125 + -0.3 226,126 - +0.4 226,339 - PS417_01040 0.15 -0.2 226,542 - PS417_01040 0.33 -0.5 226,570 + PS417_01040 0.36 -3.0 226,570 + PS417_01040 0.36 +1.1 226,570 + PS417_01040 0.36 +0.5 226,571 - PS417_01040 0.36 +0.8 226,746 - PS417_01040 0.52 +0.4 226,811 - PS417_01040 0.58 +1.0 226,811 - PS417_01040 0.58 +2.1 226,811 - PS417_01040 0.58 -1.1 226,929 + PS417_01040 0.69 +1.8 227,583 + PS417_01045 0.30 +0.1 227,583 + PS417_01045 0.30 -0.8 227,583 + PS417_01045 0.30 +0.9 227,584 - PS417_01045 0.30 -2.4 227,584 - -1.1
Or see this region's nucleotide sequence