Strain Fitness in Pseudomonas simiae WCS417 around PS417_10225

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
2,185,341	+		PS417_10210	0.42	-0.5
2,185,413	-		PS417_10210	0.56	-1.5
2,185,501	+		PS417_10210	0.73	-0.9
2,185,502	-		PS417_10210	0.73	+0.2
2,185,502	-		PS417_10210	0.73	+0.8
2,185,575	+		PS417_10210	0.87	-0.2
2,185,576	-		PS417_10210	0.87	-1.1
2,185,596	+				+0.1
2,185,596	+				+2.1
2,185,596	+				-0.7
2,185,614	+				-1.0
2,185,615	-				+0.2
2,185,615	-				-0.6
2,185,615	-				-2.1
2,185,615	-				-1.2
2,185,615	-				+0.6
2,185,649	-				-0.7
2,185,649	-				+0.9
2,185,792	-		PS417_10215	0.52	-0.3
2,185,873	+				-0.6
2,185,926	+				-1.5
2,185,927	-				+0.3
2,186,068	+		PS417_10220	0.54	-0.4
2,186,068	+		PS417_10220	0.54	-0.7
2,186,068	+		PS417_10220	0.54	-2.5
2,186,130	+		PS417_10220	0.79	+0.2
2,186,131	-				+3.7
2,186,401	+		PS417_10225	0.31	+2.7
2,186,401	+		PS417_10225	0.31	+0.2
2,186,401	+		PS417_10225	0.31	+1.1
2,186,402	-		PS417_10225	0.31	+0.3
2,186,448	+		PS417_10225	0.39	+0.6
2,186,499	+		PS417_10225	0.49	+2.1
2,186,499	+		PS417_10225	0.49	-0.0
2,186,542	-		PS417_10225	0.57	-1.2
2,186,852	+				-0.5
2,187,228	-				-0.4
2,187,242	+				-0.7
2,187,243	-				-0.3
2,187,243	-				-0.4
2,187,243	-				+1.0
2,187,243	-				-1.7
2,187,243	-				-0.7
2,187,297	+				-1.1
2,187,395	+				-2.2
2,187,464	+				+0.6
2,187,465	-				-0.8
2,187,465	-				+1.3
2,187,491	+				-0.6
2,187,497	+				+0.3
2,187,497	+				+0.6
2,187,500	+				-0.5
2,187,501	-				+1.1
2,187,537	+				-1.0
2,187,552	+				-1.7
2,187,553	-				+0.9
2,187,594	+				+0.6
2,187,663	+				-0.2
2,187,664	-				+0.6
2,187,702	+				+0.6
2,187,702	+				+4.2
2,187,706	+				-1.2
2,187,707	-				+1.1
2,187,707	-				-0.2
2,187,734	-				-1.1