Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00900 and PS417_00905 are separated by 139 nucleotides PS417_00905 and PS417_00910 are separated by 2 nucleotides
PS417_00900: PS417_00900 - 4-aminobutyrate aminotransferase, at 200,854 to 202,131
_00900
PS417_00905: PS417_00905 - histidine kinase, at 202,271 to 203,479
_00905
PS417_00910: PS417_00910 - diguanylate cyclase, at 203,482 to 204,483
_00910
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 201.710 kb on - strand, within PS417_00900 at 201.748 kb on + strand, within PS417_00900 at 201.749 kb on - strand, within PS417_00900 at 202.129 kb on + strand at 202.217 kb on + strand at 202.238 kb on + strand at 202.296 kb on + strand at 202.679 kb on + strand, within PS417_00905 at 202.679 kb on + strand, within PS417_00905 at 202.940 kb on - strand, within PS417_00905 at 203.117 kb on + strand, within PS417_00905 at 203.228 kb on + strand, within PS417_00905 at 203.229 kb on - strand, within PS417_00905 at 203.246 kb on + strand, within PS417_00905 at 203.246 kb on + strand, within PS417_00905 at 203.247 kb on - strand, within PS417_00905 at 203.352 kb on + strand, within PS417_00905 at 203.525 kb on + strand at 203.526 kb on - strand at 203.526 kb on - strand at 203.630 kb on + strand, within PS417_00910 at 203.631 kb on - strand, within PS417_00910 at 203.787 kb on + strand, within PS417_00910 at 204.071 kb on + strand, within PS417_00910 at 204.071 kb on + strand, within PS417_00910 at 204.072 kb on - strand, within PS417_00910 at 204.072 kb on - strand, within PS417_00910 at 204.072 kb on - strand, within PS417_00910 at 204.179 kb on + strand, within PS417_00910 at 204.180 kb on - strand, within PS417_00910 at 204.266 kb on + strand, within PS417_00910 at 204.281 kb on + strand, within PS417_00910 at 204.281 kb on + strand, within PS417_00910 at 204.282 kb on - strand, within PS417_00910 at 204.282 kb on - strand, within PS417_00910 at 204.282 kb on - strand, within PS417_00910
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 201,710 - PS417_00900 0.67 -2.5 201,748 + PS417_00900 0.70 -0.8 201,749 - PS417_00900 0.70 +1.0 202,129 + -0.5 202,217 + +1.5 202,238 + -0.2 202,296 + -0.5 202,679 + PS417_00905 0.34 -0.1 202,679 + PS417_00905 0.34 +0.2 202,940 - PS417_00905 0.55 -0.7 203,117 + PS417_00905 0.70 +0.3 203,228 + PS417_00905 0.79 +3.1 203,229 - PS417_00905 0.79 +0.2 203,246 + PS417_00905 0.81 +0.8 203,246 + PS417_00905 0.81 +1.5 203,247 - PS417_00905 0.81 -0.9 203,352 + PS417_00905 0.89 -2.3 203,525 + +1.5 203,526 - +1.5 203,526 - +2.0 203,630 + PS417_00910 0.15 +0.8 203,631 - PS417_00910 0.15 +0.3 203,787 + PS417_00910 0.30 -1.3 204,071 + PS417_00910 0.59 +0.5 204,071 + PS417_00910 0.59 +1.5 204,072 - PS417_00910 0.59 -0.6 204,072 - PS417_00910 0.59 -0.3 204,072 - PS417_00910 0.59 -0.5 204,179 + PS417_00910 0.70 +1.9 204,180 - PS417_00910 0.70 -1.7 204,266 + PS417_00910 0.78 +1.1 204,281 + PS417_00910 0.80 +1.0 204,281 + PS417_00910 0.80 +1.7 204,282 - PS417_00910 0.80 +1.5 204,282 - PS417_00910 0.80 -0.3 204,282 - PS417_00910 0.80 -0.4
Or see this region's nucleotide sequence