Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00880 and PS417_00885 are separated by 255 nucleotides PS417_00885 and PS417_00890 are separated by 167 nucleotides PS417_00890 and PS417_00895 are separated by 371 nucleotides
PS417_00880: PS417_00880 - hypothetical protein, at 196,831 to 197,124
_00880
PS417_00885: PS417_00885 - integrase, at 197,380 to 198,615
_00885
PS417_00890: PS417_00890 - tRNA-Arg, at 198,783 to 198,859
_00890
PS417_00895: PS417_00895 - succinate-semialdehyde dehydrogenase, at 199,231 to 200,673
_00895
Position (kb) 197
198
199 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 196.396 kb on + strand at 196.397 kb on - strand at 196.397 kb on - strand at 196.397 kb on - strand at 196.533 kb on + strand at 196.632 kb on + strand at 196.677 kb on + strand at 196.678 kb on - strand at 196.678 kb on - strand at 196.680 kb on + strand at 196.681 kb on - strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.727 kb on - strand at 196.727 kb on - strand at 196.731 kb on - strand at 196.782 kb on - strand at 196.789 kb on + strand at 196.796 kb on + strand at 196.797 kb on - strand at 196.797 kb on - strand at 196.816 kb on - strand at 196.883 kb on + strand, within PS417_00880 at 196.883 kb on + strand, within PS417_00880 at 196.935 kb on - strand, within PS417_00880 at 196.975 kb on + strand, within PS417_00880 at 197.056 kb on + strand, within PS417_00880 at 197.057 kb on - strand, within PS417_00880 at 197.057 kb on - strand, within PS417_00880 at 197.057 kb on - strand, within PS417_00880 at 197.057 kb on - strand, within PS417_00880 at 197.058 kb on + strand, within PS417_00880 at 197.059 kb on - strand, within PS417_00880 at 197.116 kb on - strand at 197.344 kb on + strand at 197.412 kb on + strand at 197.425 kb on + strand at 197.425 kb on + strand at 197.447 kb on + strand at 197.481 kb on - strand at 197.493 kb on + strand at 197.494 kb on - strand at 197.495 kb on + strand at 197.495 kb on + strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.496 kb on - strand at 197.572 kb on + strand, within PS417_00885 at 197.696 kb on - strand, within PS417_00885 at 197.716 kb on - strand, within PS417_00885 at 197.725 kb on + strand, within PS417_00885 at 197.725 kb on + strand, within PS417_00885 at 197.726 kb on - strand, within PS417_00885 at 197.813 kb on - strand, within PS417_00885 at 197.875 kb on + strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.876 kb on - strand, within PS417_00885 at 197.878 kb on + strand, within PS417_00885 at 197.878 kb on + strand, within PS417_00885 at 197.878 kb on + strand, within PS417_00885 at 197.879 kb on - strand, within PS417_00885 at 197.924 kb on + strand, within PS417_00885 at 197.925 kb on - strand, within PS417_00885 at 197.991 kb on + strand, within PS417_00885 at 197.992 kb on - strand, within PS417_00885 at 198.065 kb on + strand, within PS417_00885 at 198.065 kb on + strand, within PS417_00885 at 198.066 kb on - strand, within PS417_00885 at 198.066 kb on - strand, within PS417_00885 at 198.133 kb on + strand, within PS417_00885 at 198.160 kb on + strand, within PS417_00885 at 198.220 kb on + strand, within PS417_00885 at 198.234 kb on + strand, within PS417_00885 at 198.234 kb on + strand, within PS417_00885 at 198.234 kb on + strand, within PS417_00885 at 198.495 kb on + strand at 198.513 kb on - strand at 198.539 kb on + strand at 198.543 kb on + strand at 198.543 kb on + strand at 198.543 kb on + strand at 198.544 kb on - strand at 198.544 kb on - strand at 198.544 kb on - strand at 198.622 kb on + strand at 198.622 kb on + strand at 198.623 kb on - strand at 198.636 kb on + strand at 198.637 kb on - strand at 198.637 kb on - strand at 198.637 kb on - strand at 198.652 kb on + strand at 198.653 kb on - strand at 198.653 kb on - strand at 198.653 kb on - strand at 198.653 kb on - strand at 198.751 kb on + strand at 198.752 kb on - strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.779 kb on + strand at 198.780 kb on - strand at 198.780 kb on - strand at 198.780 kb on - strand at 198.780 kb on - strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.781 kb on + strand at 198.782 kb on - strand at 199.007 kb on - strand at 199.015 kb on + strand at 199.051 kb on + strand at 199.052 kb on - strand at 199.062 kb on - strand at 199.076 kb on + strand at 199.188 kb on + strand at 199.188 kb on + strand at 199.189 kb on - strand at 199.189 kb on - strand at 199.217 kb on + strand at 199.218 kb on - strand at 199.239 kb on + strand at 199.350 kb on + strand at 199.610 kb on - strand, within PS417_00895 at 199.610 kb on - strand, within PS417_00895
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 196,396 + -2.6 196,397 - -1.5 196,397 - -0.9 196,397 - -1.9 196,533 + -3.8 196,632 + +0.2 196,677 + -3.4 196,678 - +0.8 196,678 - -1.9 196,680 + -3.0 196,681 - -0.2 196,726 + -2.3 196,726 + +0.1 196,726 + -1.3 196,726 + +0.3 196,727 - +0.5 196,727 - +0.1 196,731 - -0.1 196,782 - -0.6 196,789 + -3.3 196,796 + -1.4 196,797 - +0.0 196,797 - -0.3 196,816 - -1.1 196,883 + PS417_00880 0.18 -0.9 196,883 + PS417_00880 0.18 -1.7 196,935 - PS417_00880 0.35 +0.0 196,975 + PS417_00880 0.49 -0.2 197,056 + PS417_00880 0.77 -0.8 197,057 - PS417_00880 0.77 -1.3 197,057 - PS417_00880 0.77 +1.2 197,057 - PS417_00880 0.77 -0.7 197,057 - PS417_00880 0.77 +1.9 197,058 + PS417_00880 0.77 -1.3 197,059 - PS417_00880 0.78 -2.3 197,116 - -0.4 197,344 + -1.2 197,412 + -0.9 197,425 + -1.3 197,425 + +0.2 197,447 + -0.4 197,481 - -0.1 197,493 + +0.7 197,494 - +0.6 197,495 + +2.3 197,495 + +1.5 197,496 - +0.8 197,496 - +0.0 197,496 - -0.5 197,572 + PS417_00885 0.16 -0.7 197,696 - PS417_00885 0.26 +0.2 197,716 - PS417_00885 0.27 +0.3 197,725 + PS417_00885 0.28 +0.1 197,725 + PS417_00885 0.28 +0.1 197,726 - PS417_00885 0.28 -0.2 197,813 - PS417_00885 0.35 -0.4 197,875 + PS417_00885 0.40 +1.1 197,876 - PS417_00885 0.40 +1.6 197,876 - PS417_00885 0.40 -0.0 197,876 - PS417_00885 0.40 +0.7 197,876 - PS417_00885 0.40 -0.3 197,878 + PS417_00885 0.40 -2.2 197,878 + PS417_00885 0.40 +0.6 197,878 + PS417_00885 0.40 -2.1 197,879 - PS417_00885 0.40 +2.2 197,924 + PS417_00885 0.44 +1.1 197,925 - PS417_00885 0.44 -0.1 197,991 + PS417_00885 0.49 +0.1 197,992 - PS417_00885 0.50 +0.7 198,065 + PS417_00885 0.55 -0.2 198,065 + PS417_00885 0.55 +0.5 198,066 - PS417_00885 0.56 +0.5 198,066 - PS417_00885 0.56 +0.7 198,133 + PS417_00885 0.61 -1.3 198,160 + PS417_00885 0.63 -1.1 198,220 + PS417_00885 0.68 +1.1 198,234 + PS417_00885 0.69 +2.6 198,234 + PS417_00885 0.69 -0.6 198,234 + PS417_00885 0.69 +0.7 198,495 + -2.4 198,513 - +1.2 198,539 + -0.1 198,543 + -0.9 198,543 + +0.6 198,543 + -2.2 198,544 - +0.4 198,544 - +0.9 198,544 - +0.8 198,622 + -0.4 198,622 + +1.5 198,623 - -0.3 198,636 + -0.5 198,637 - +0.3 198,637 - -0.5 198,637 - -0.1 198,652 + +1.5 198,653 - -0.3 198,653 - -1.4 198,653 - -0.8 198,653 - -0.2 198,751 + -0.9 198,752 - -3.5 198,779 + +2.9 198,779 + +0.2 198,779 + -0.2 198,779 + +0.5 198,779 + -0.4 198,780 - -1.2 198,780 - -2.0 198,780 - -2.1 198,780 - -1.3 198,781 + +0.0 198,781 + -2.2 198,781 + +0.5 198,781 + -0.4 198,781 + +1.0 198,781 + -4.0 198,782 - -2.6 199,007 - -0.9 199,015 + +0.7 199,051 + -0.5 199,052 - +0.5 199,062 - -0.6 199,076 + -2.0 199,188 + +0.2 199,188 + -0.2 199,189 - -3.7 199,189 - -0.1 199,217 + +0.4 199,218 - -0.3 199,239 + +1.5 199,350 + +0.6 199,610 - PS417_00895 0.26 -0.7 199,610 - PS417_00895 0.26 -0.9
Or see this region's nucleotide sequence