Strain Fitness in Pseudomonas simiae WCS417 around PS417_00800

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00790 and PS417_00795 are separated by 41 nucleotidesPS417_00795 and PS417_00800 overlap by 4 nucleotidesPS417_00800 and PS417_00805 are separated by 112 nucleotides PS417_00790: PS417_00790 - curli production assembly protein CsgG, at 176,162 to 176,842 _00790 PS417_00795: PS417_00795 - lipoprotein, at 176,884 to 177,246 _00795 PS417_00800: PS417_00800 - lipoprotein, at 177,243 to 177,893 _00800 PS417_00805: PS417_00805 - hypothetical protein, at 178,006 to 179,646 _00805 Position (kb) 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 176.289 kb on - strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.342 kb on + strand, within PS417_00790at 176.343 kb on - strand, within PS417_00790at 176.615 kb on + strand, within PS417_00790at 176.666 kb on + strandat 176.667 kb on - strand, within PS417_00790at 176.667 kb on - strand, within PS417_00790at 176.667 kb on - strand, within PS417_00790at 176.877 kb on + strandat 176.877 kb on + strandat 176.877 kb on + strandat 176.877 kb on + strandat 176.877 kb on + strandat 176.878 kb on - strandat 176.878 kb on - strandat 176.966 kb on - strand, within PS417_00795at 176.966 kb on - strand, within PS417_00795at 177.001 kb on + strand, within PS417_00795at 177.002 kb on - strand, within PS417_00795at 177.119 kb on - strand, within PS417_00795at 177.119 kb on - strand, within PS417_00795at 177.197 kb on - strand, within PS417_00795at 177.240 kb on + strandat 177.241 kb on - strandat 177.322 kb on - strand, within PS417_00800at 177.331 kb on - strand, within PS417_00800at 177.331 kb on - strand, within PS417_00800at 177.331 kb on - strandat 177.403 kb on - strand, within PS417_00800at 177.448 kb on - strand, within PS417_00800at 177.448 kb on - strand, within PS417_00800at 177.451 kb on - strand, within PS417_00800at 177.573 kb on + strand, within PS417_00800at 177.573 kb on + strand, within PS417_00800at 177.574 kb on - strand, within PS417_00800at 177.574 kb on - strand, within PS417_00800at 177.603 kb on + strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 177.604 kb on - strand, within PS417_00800at 178.157 kb on + strandat 178.265 kb on - strand, within PS417_00805at 178.358 kb on + strand, within PS417_00805at 178.426 kb on + strand, within PS417_00805at 178.426 kb on + strand, within PS417_00805at 178.702 kb on + strand, within PS417_00805at 178.703 kb on - strand, within PS417_00805at 178.703 kb on - strand, within PS417_00805

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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176,289 - PS417_00790 0.19 -2.0
176,342 + PS417_00790 0.26 -1.7
176,342 + PS417_00790 0.26 +0.5
176,342 + PS417_00790 0.26 -0.3
176,342 + PS417_00790 0.26 -1.3
176,343 - PS417_00790 0.27 +0.5
176,615 + PS417_00790 0.67 -2.3
176,666 + +1.5
176,667 - PS417_00790 0.74 -0.0
176,667 - PS417_00790 0.74 -1.4
176,667 - PS417_00790 0.74 -0.2
176,877 + -0.9
176,877 + +0.0
176,877 + +0.5
176,877 + -1.3
176,877 + +0.5
176,878 - -1.2
176,878 - -1.5
176,966 - PS417_00795 0.23 -0.0
176,966 - PS417_00795 0.23 +1.5
177,001 + PS417_00795 0.32 +0.0
177,002 - PS417_00795 0.33 -1.0
177,119 - PS417_00795 0.65 -0.2
177,119 - PS417_00795 0.65 +2.0
177,197 - PS417_00795 0.86 -2.8
177,240 + +0.5
177,241 - +0.4
177,322 - PS417_00800 0.12 +1.4
177,331 - PS417_00800 0.14 -1.1
177,331 - PS417_00800 0.14 +0.4
177,331 - +1.5
177,403 - PS417_00800 0.25 -1.1
177,448 - PS417_00800 0.31 -0.1
177,448 - PS417_00800 0.31 +1.4
177,451 - PS417_00800 0.32 +1.1
177,573 + PS417_00800 0.51 -0.5
177,573 + PS417_00800 0.51 +0.7
177,574 - PS417_00800 0.51 +0.2
177,574 - PS417_00800 0.51 +0.4
177,603 + PS417_00800 0.55 +0.2
177,604 - PS417_00800 0.55 +0.2
177,604 - PS417_00800 0.55 -1.4
177,604 - PS417_00800 0.55 +0.8
177,604 - PS417_00800 0.55 +2.0
177,604 - PS417_00800 0.55 +0.2
178,157 + +0.5
178,265 - PS417_00805 0.16 +1.2
178,358 + PS417_00805 0.21 +0.9
178,426 + PS417_00805 0.26 -2.4
178,426 + PS417_00805 0.26 +1.0
178,702 + PS417_00805 0.42 -0.1
178,703 - PS417_00805 0.42 -0.2
178,703 - PS417_00805 0.42 -0.3

Or see this region's nucleotide sequence