Strain Fitness in Pseudomonas simiae WCS417 around PS417_07390

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
1,626,560	+		PS417_07385	0.33	-1.3
1,626,560	+		PS417_07385	0.33	+1.2
1,626,560	+		PS417_07385	0.33	-1.1
1,626,560	+		PS417_07385	0.33	+0.6
1,626,560	+		PS417_07385	0.33	+1.9
1,626,560	+		PS417_07385	0.33	-0.0
1,626,561	-		PS417_07385	0.33	+0.0
1,626,561	-		PS417_07385	0.33	-3.0
1,626,561	-				-0.3
1,626,561	-		PS417_07385	0.33	+0.8
1,626,821	+		PS417_07385	0.61	+1.1
1,626,822	-		PS417_07385	0.61	+0.1
1,626,854	-		PS417_07385	0.65	-0.3
1,626,867	-		PS417_07385	0.66	-0.9
1,627,229	+				-1.3
1,627,229	+				-0.8
1,627,229	+				+0.0
1,627,229	+				-1.5
1,627,229	+				+1.5
1,627,229	+				-0.5
1,627,229	+				+0.8
1,627,229	+				-0.3
1,627,229	+				-1.3
1,627,229	+				-0.5
1,627,229	+				-0.2
1,627,230	-				+0.4
1,627,230	-				-0.4
1,627,230	-				+0.9
1,627,230	-				+0.6
1,627,230	-				-0.2
1,627,230	-				-0.5
1,627,230	-				-1.3
1,627,230	-				+1.0
1,627,230	-				+0.7
1,627,230	-				+0.3
1,627,233	+				-0.7
1,627,314	+				-0.9
1,627,314	+				+1.2
1,627,315	-				-1.9
1,627,342	-				-0.2
1,627,342	-				+1.3
1,627,342	-				+0.6
1,627,639	-				+0.7
1,627,717	+		PS417_07390	0.11	+1.2
1,627,718	-		PS417_07390	0.11	-1.3
1,627,718	-		PS417_07390	0.11	+0.3
1,627,718	-		PS417_07390	0.11	-2.5
1,627,767	-				-2.0
1,628,104	+		PS417_07390	0.22	-0.6
1,628,105	-		PS417_07390	0.22	-1.5
1,628,105	-		PS417_07390	0.22	+0.5
1,628,105	-		PS417_07390	0.22	+1.7
1,628,326	+		PS417_07390	0.28	+1.0
1,628,326	+		PS417_07390	0.28	-0.6
1,628,327	-		PS417_07390	0.28	+0.1
1,628,360	-		PS417_07390	0.29	+0.4
1,628,360	-		PS417_07390	0.29	+0.1
1,628,444	-		PS417_07390	0.31	-0.2
1,628,510	-		PS417_07390	0.33	+0.0
1,628,742	+		PS417_07390	0.40	-0.0
1,628,897	-		PS417_07390	0.44	-0.4
1,628,897	-		PS417_07390	0.44	+0.2
1,628,913	-		PS417_07390	0.45	-0.5
1,628,953	-		PS417_07390	0.46	+0.9
1,628,954	+		PS417_07390	0.46	-1.1
1,628,954	+		PS417_07390	0.46	-1.0
1,628,954	+		PS417_07390	0.46	-0.3
1,628,954	+		PS417_07390	0.46	-1.7
1,628,954	+		PS417_07390	0.46	+0.4
1,628,955	-		PS417_07390	0.46	+1.5
1,628,955	-		PS417_07390	0.46	+1.3
1,628,955	-		PS417_07390	0.46	-1.0
1,628,955	-		PS417_07390	0.46	-2.2
1,628,955	-		PS417_07390	0.46	-2.5
1,628,955	-		PS417_07390	0.46	+0.0
1,628,955	-		PS417_07390	0.46	-2.9
1,628,955	-		PS417_07390	0.46	+2.2
1,629,071	-		PS417_07390	0.49	-0.4
1,629,071	-		PS417_07390	0.49	-0.2
1,629,089	+		PS417_07390	0.50	-1.5
1,629,089	+		PS417_07390	0.50	+0.7
1,629,089	+		PS417_07390	0.50	-0.9
1,629,090	-		PS417_07390	0.50	-1.4
1,629,093	+		PS417_07390	0.50	-0.5
1,629,151	-		PS417_07390	0.51	-1.4
1,629,166	-		PS417_07390	0.52	-0.1
1,629,166	-		PS417_07390	0.52	+1.0
1,629,169	+		PS417_07390	0.52	+0.5
1,629,169	+		PS417_07390	0.52	-1.1
1,629,170	-		PS417_07390	0.52	-0.2
1,629,170	-		PS417_07390	0.52	-1.3
1,629,238	+		PS417_07390	0.54	+0.4
1,629,239	-		PS417_07390	0.54	+0.1
1,629,312	+		PS417_07390	0.56	+1.1
1,629,348	+		PS417_07390	0.57	+0.6
1,629,348	+		PS417_07390	0.57	+1.0
1,629,348	+		PS417_07390	0.57	+0.5
1,629,401	+				+1.6
1,629,402	-		PS417_07390	0.59	+0.8
1,629,402	-		PS417_07390	0.59	-0.1
1,629,960	+		PS417_07390	0.74	-0.7
1,629,990	+		PS417_07390	0.75	+1.3
1,629,990	+		PS417_07390	0.75	-0.8
1,629,990	+		PS417_07390	0.75	-0.0
1,629,991	-		PS417_07390	0.75	+0.1
1,629,991	-		PS417_07390	0.75	-0.9
1,629,991	-		PS417_07390	0.75	-0.0
1,630,036	-		PS417_07390	0.77	+1.3
1,630,142	+		PS417_07390	0.80	-1.0
1,630,143	-		PS417_07390	0.80	-0.1
1,630,143	-		PS417_07390	0.80	-0.3
1,630,143	-				-1.0
1,630,143	-				+1.3
1,630,144	+		PS417_07390	0.80	-1.0
1,630,144	+		PS417_07390	0.80	-2.3
1,630,144	+		PS417_07390	0.80	+0.1
1,630,144	+		PS417_07390	0.80	+1.1
1,630,144	+		PS417_07390	0.80	-1.3
1,630,144	+		PS417_07390	0.80	-1.4
1,630,145	-		PS417_07390	0.80	-1.0
1,630,145	-		PS417_07390	0.80	-2.6
1,630,145	-		PS417_07390	0.80	-1.1
1,630,145	-		PS417_07390	0.80	-0.5
1,630,145	-		PS417_07390	0.80	-0.6
1,630,173	+		PS417_07390	0.80	-0.5
1,630,250	+		PS417_07390	0.83	-0.3
1,630,251	-		PS417_07390	0.83	-1.7
1,630,264	+		PS417_07390	0.83	-0.8
1,630,435	+		PS417_07390	0.88	-1.1
1,630,435	+		PS417_07390	0.88	+0.1
1,630,436	-		PS417_07390	0.88	+0.0
1,630,437	+		PS417_07390	0.88	-3.3
1,630,507	-				-3.4
1,630,510	+				-0.3
1,630,510	+				-0.7
1,630,558	+				-0.2
1,630,559	-				-0.2
1,630,572	+				-2.9
1,630,573	-				+0.0
1,630,647	+				+1.1
1,630,648	-				+0.2
1,630,678	+				-0.7
1,630,678	+				-2.2
1,630,678	+				+0.5
1,630,679	-				+0.1
1,630,679	-				+0.6
1,630,711	+				-0.7
1,630,711	+				-1.5
1,630,712	-				+0.2
1,630,712	-				+0.8
1,630,795	+				-0.7
1,630,795	+				-0.6
1,630,818	-				-0.4
1,631,348	-				+1.9
1,631,562	-				-1.1
1,631,800	+		PS417_07400	0.30	-2.0
1,631,800	+		PS417_07400	0.30	-2.9
1,631,800	+		PS417_07400	0.30	-0.1
1,631,803	+		PS417_07400	0.31	-1.1