Strain Fitness in Pseudomonas simiae WCS417 around PS417_00620

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00615 and PS417_00620 are separated by 330 nucleotidesPS417_00620 and PS417_00625 are separated by 366 nucleotides PS417_00615: PS417_00615 - hypothetical protein, at 126,081 to 126,839 _00615 PS417_00620: PS417_00620 - GntR family transcriptional regulator, at 127,170 to 127,880 _00620 PS417_00625: PS417_00625 - taurine dioxygenase, at 128,247 to 129,140 _00625 Position (kb) 127 128Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 126.182 kb on + strand, within PS417_00615at 126.182 kb on + strand, within PS417_00615at 126.182 kb on + strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.210 kb on + strand, within PS417_00615at 126.210 kb on + strand, within PS417_00615at 126.211 kb on - strand, within PS417_00615at 126.211 kb on - strand, within PS417_00615at 126.281 kb on + strand, within PS417_00615at 126.575 kb on - strand, within PS417_00615at 126.952 kb on + strandat 126.952 kb on + strandat 126.952 kb on + strandat 127.063 kb on + strandat 127.064 kb on - strandat 127.112 kb on + strandat 127.137 kb on + strandat 127.167 kb on - strandat 127.432 kb on + strand, within PS417_00620at 127.433 kb on - strand, within PS417_00620at 127.478 kb on - strand, within PS417_00620at 127.506 kb on - strand, within PS417_00620at 127.506 kb on - strand, within PS417_00620at 127.506 kb on - strand, within PS417_00620at 127.594 kb on + strand, within PS417_00620at 127.595 kb on - strand, within PS417_00620at 127.833 kb on - strandat 127.833 kb on - strandat 127.898 kb on + strandat 127.899 kb on - strandat 127.899 kb on - strandat 127.901 kb on + strandat 127.902 kb on - strandat 127.902 kb on - strandat 127.937 kb on - strandat 127.981 kb on + strandat 127.981 kb on + strandat 127.995 kb on + strandat 127.996 kb on - strandat 128.024 kb on + strandat 128.024 kb on + strandat 128.034 kb on + strandat 128.106 kb on + strandat 128.120 kb on - strandat 128.204 kb on + strandat 128.207 kb on - strandat 128.261 kb on + strandat 128.262 kb on - strandat 128.613 kb on + strand, within PS417_00625at 128.613 kb on + strand, within PS417_00625at 128.613 kb on + strand, within PS417_00625at 128.613 kb on + strand, within PS417_00625at 128.613 kb on + strand, within PS417_00625at 128.613 kb on + strand, within PS417_00625at 128.614 kb on - strand, within PS417_00625at 128.614 kb on - strand, within PS417_00625at 128.614 kb on - strand, within PS417_00625at 128.614 kb on - strand, within PS417_00625at 128.614 kb on - strand, within PS417_00625at 128.615 kb on + strand, within PS417_00625at 128.616 kb on - strand, within PS417_00625at 128.766 kb on + strand, within PS417_00625

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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126,182 + PS417_00615 0.13 -0.1
126,182 + PS417_00615 0.13 -0.7
126,182 + PS417_00615 0.13 +0.1
126,183 - PS417_00615 0.13 -0.8
126,183 - PS417_00615 0.13 +0.4
126,183 - PS417_00615 0.13 +0.8
126,210 + PS417_00615 0.17 -1.2
126,210 + PS417_00615 0.17 -0.8
126,211 - PS417_00615 0.17 -0.0
126,211 - PS417_00615 0.17 -0.3
126,281 + PS417_00615 0.26 -0.2
126,575 - PS417_00615 0.65 +0.5
126,952 + +0.6
126,952 + +0.3
126,952 + -2.8
127,063 + -1.7
127,064 - +0.1
127,112 + +2.0
127,137 + +1.4
127,167 - +2.9
127,432 + PS417_00620 0.37 -1.3
127,433 - PS417_00620 0.37 +0.8
127,478 - PS417_00620 0.43 +0.7
127,506 - PS417_00620 0.47 +0.3
127,506 - PS417_00620 0.47 -0.3
127,506 - PS417_00620 0.47 +0.1
127,594 + PS417_00620 0.60 -1.0
127,595 - PS417_00620 0.60 +0.3
127,833 - +1.3
127,833 - +1.6
127,898 + +0.4
127,899 - -0.1
127,899 - +0.4
127,901 + +1.5
127,902 - -0.6
127,902 - -2.2
127,937 - -2.0
127,981 + -0.7
127,981 + +0.7
127,995 + -2.1
127,996 - -4.5
128,024 + +0.1
128,024 + -1.9
128,034 + +1.5
128,106 + -0.6
128,120 - -4.8
128,204 + -0.7
128,207 - -4.0
128,261 + -1.4
128,262 - -4.8
128,613 + PS417_00625 0.41 -2.2
128,613 + PS417_00625 0.41 -2.1
128,613 + PS417_00625 0.41 -0.4
128,613 + PS417_00625 0.41 -3.4
128,613 + PS417_00625 0.41 +0.5
128,613 + PS417_00625 0.41 -0.4
128,614 - PS417_00625 0.41 -2.5
128,614 - PS417_00625 0.41 -2.4
128,614 - PS417_00625 0.41 -4.5
128,614 - PS417_00625 0.41 -4.8
128,614 - PS417_00625 0.41 -3.1
128,615 + PS417_00625 0.41 -2.0
128,616 - PS417_00625 0.41 -5.6
128,766 + PS417_00625 0.58 +1.9

Or see this region's nucleotide sequence