Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06115 and PS417_06120 are separated by 142 nucleotides PS417_06120 and PS417_06125 are separated by 22 nucleotides PS417_06125 and PS417_06130 are separated by 40 nucleotides PS417_06130 and PS417_06135 are separated by 51 nucleotides
PS417_06115: PS417_06115 - multidrug transporter AcrB, at 1,354,370 to 1,357,435
_06115
PS417_06120: PS417_06120 - hypothetical protein, at 1,357,578 to 1,357,850
_06120
PS417_06125: PS417_06125 - hypothetical protein, at 1,357,873 to 1,358,562
_06125
PS417_06130: PS417_06130 - hypothetical protein, at 1,358,603 to 1,359,004
_06130
PS417_06135: PS417_06135 - glycerol-3-phosphate acyltransferase, at 1,359,056 to 1,361,575
_06135
Position (kb)
1357
1358
1359 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1356.902 kb on + strand, within PS417_06115 at 1357.092 kb on + strand, within PS417_06115 at 1357.398 kb on - strand at 1357.398 kb on - strand at 1357.398 kb on - strand at 1357.398 kb on - strand at 1357.511 kb on + strand at 1357.602 kb on + strand at 1357.605 kb on + strand at 1357.606 kb on - strand, within PS417_06120 at 1357.612 kb on - strand, within PS417_06120 at 1357.623 kb on + strand, within PS417_06120 at 1357.642 kb on - strand, within PS417_06120 at 1357.642 kb on - strand, within PS417_06120 at 1357.657 kb on - strand, within PS417_06120 at 1357.680 kb on + strand, within PS417_06120 at 1357.680 kb on + strand, within PS417_06120 at 1357.681 kb on - strand, within PS417_06120 at 1357.731 kb on + strand, within PS417_06120 at 1357.732 kb on - strand, within PS417_06120 at 1357.739 kb on + strand, within PS417_06120 at 1357.740 kb on - strand, within PS417_06120 at 1357.874 kb on + strand at 1358.063 kb on + strand, within PS417_06125 at 1358.063 kb on + strand at 1358.063 kb on + strand, within PS417_06125 at 1358.064 kb on - strand, within PS417_06125 at 1358.064 kb on - strand, within PS417_06125 at 1358.064 kb on - strand, within PS417_06125 at 1358.577 kb on + strand at 1358.588 kb on - strand at 1358.686 kb on + strand, within PS417_06130 at 1358.687 kb on - strand, within PS417_06130 at 1358.694 kb on - strand, within PS417_06130 at 1358.694 kb on - strand, within PS417_06130 at 1358.763 kb on + strand, within PS417_06130 at 1358.763 kb on + strand, within PS417_06130 at 1358.764 kb on - strand, within PS417_06130 at 1358.764 kb on - strand, within PS417_06130 at 1358.907 kb on + strand, within PS417_06130 at 1359.051 kb on + strand at 1359.051 kb on + strand at 1359.052 kb on - strand at 1359.052 kb on - strand at 1359.412 kb on - strand, within PS417_06135 at 1359.423 kb on + strand, within PS417_06135
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 1,356,902 + PS417_06115 0.83 -0.7 1,357,092 + PS417_06115 0.89 +0.0 1,357,398 - +0.6 1,357,398 - -0.4 1,357,398 - +2.7 1,357,398 - +0.6 1,357,511 + +0.0 1,357,602 + +3.1 1,357,605 + +0.9 1,357,606 - PS417_06120 0.10 -4.4 1,357,612 - PS417_06120 0.12 +0.9 1,357,623 + PS417_06120 0.16 +0.9 1,357,642 - PS417_06120 0.23 +0.1 1,357,642 - PS417_06120 0.23 -0.2 1,357,657 - PS417_06120 0.29 -0.0 1,357,680 + PS417_06120 0.37 +0.2 1,357,680 + PS417_06120 0.37 -2.1 1,357,681 - PS417_06120 0.38 -4.4 1,357,731 + PS417_06120 0.56 +0.2 1,357,732 - PS417_06120 0.56 -1.7 1,357,739 + PS417_06120 0.59 -2.7 1,357,740 - PS417_06120 0.59 +1.9 1,357,874 + -0.3 1,358,063 + PS417_06125 0.28 -4.0 1,358,063 + -2.0 1,358,063 + PS417_06125 0.28 -0.2 1,358,064 - PS417_06125 0.28 -3.3 1,358,064 - PS417_06125 0.28 -0.2 1,358,064 - PS417_06125 0.28 -2.2 1,358,577 + -0.2 1,358,588 - -0.2 1,358,686 + PS417_06130 0.21 +0.3 1,358,687 - PS417_06130 0.21 -2.1 1,358,694 - PS417_06130 0.23 -0.0 1,358,694 - PS417_06130 0.23 +1.0 1,358,763 + PS417_06130 0.40 -1.5 1,358,763 + PS417_06130 0.40 -0.7 1,358,764 - PS417_06130 0.40 +0.3 1,358,764 - PS417_06130 0.40 +2.8 1,358,907 + PS417_06130 0.76 -1.5 1,359,051 + +1.8 1,359,051 + +0.3 1,359,052 - -1.0 1,359,052 - +0.1 1,359,412 - PS417_06135 0.14 -0.7 1,359,423 + PS417_06135 0.15 +3.6
Or see this region's nucleotide sequence