Strain Fitness in Pseudomonas simiae WCS417 around PS417_05935

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05925 and PS417_05930 overlap by 11 nucleotidesPS417_05930 and PS417_05935 are separated by 1 nucleotidesPS417_05935 and PS417_05940 are separated by 201 nucleotides PS417_05925: PS417_05925 - spermidine/putrescine ABC transporter permease, at 1,317,384 to 1,318,193 _05925 PS417_05930: PS417_05930 - spermidine/putrescine ABC transporter permease, at 1,318,183 to 1,319,112 _05930 PS417_05935: PS417_05935 - polyamine ABC transporter ATP-binding protein, at 1,319,114 to 1,320,148 _05935 PS417_05940: PS417_05940 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,320,350 to 1,321,501 _05940 Position (kb) 1319 1320 1321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1318.172 kb on + strandat 1318.173 kb on - strandat 1318.173 kb on - strandat 1318.173 kb on - strandat 1318.173 kb on - strandat 1318.173 kb on - strandat 1318.226 kb on + strandat 1318.547 kb on + strand, within PS417_05930at 1318.547 kb on + strand, within PS417_05930at 1318.548 kb on - strand, within PS417_05930at 1318.703 kb on + strand, within PS417_05930at 1318.704 kb on - strand, within PS417_05930at 1318.719 kb on - strand, within PS417_05930at 1318.751 kb on + strand, within PS417_05930at 1318.752 kb on - strand, within PS417_05930at 1318.793 kb on + strand, within PS417_05930at 1318.793 kb on + strand, within PS417_05930at 1318.794 kb on - strand, within PS417_05930at 1318.797 kb on - strand, within PS417_05930at 1318.953 kb on + strand, within PS417_05930at 1318.953 kb on + strand, within PS417_05930at 1318.953 kb on + strand, within PS417_05930at 1318.955 kb on + strand, within PS417_05930at 1318.955 kb on + strand, within PS417_05930at 1319.236 kb on + strand, within PS417_05935at 1319.480 kb on - strand, within PS417_05935at 1319.480 kb on - strand, within PS417_05935at 1319.482 kb on - strand, within PS417_05935at 1319.482 kb on - strand, within PS417_05935at 1319.584 kb on + strand, within PS417_05935at 1319.816 kb on - strand, within PS417_05935at 1319.906 kb on + strand, within PS417_05935at 1319.906 kb on + strand, within PS417_05935at 1319.906 kb on + strand, within PS417_05935at 1319.907 kb on - strand, within PS417_05935at 1319.907 kb on - strand, within PS417_05935at 1319.907 kb on - strand, within PS417_05935at 1319.907 kb on - strand, within PS417_05935at 1320.285 kb on + strandat 1320.286 kb on - strandat 1320.375 kb on + strandat 1320.376 kb on - strandat 1320.597 kb on + strand, within PS417_05940at 1320.597 kb on + strand, within PS417_05940at 1320.667 kb on + strand, within PS417_05940at 1320.865 kb on - strand, within PS417_05940at 1320.907 kb on - strand, within PS417_05940at 1320.927 kb on + strand, within PS417_05940at 1320.928 kb on - strand, within PS417_05940at 1320.943 kb on - strand, within PS417_05940at 1321.045 kb on - strand, within PS417_05940at 1321.045 kb on - strand, within PS417_05940at 1321.084 kb on - strand, within PS417_05940at 1321.084 kb on - strand, within PS417_05940

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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1,318,172 + -1.2
1,318,173 - -1.2
1,318,173 - +0.8
1,318,173 - +1.1
1,318,173 - +0.3
1,318,173 - -3.0
1,318,226 + -0.5
1,318,547 + PS417_05930 0.39 +0.3
1,318,547 + PS417_05930 0.39 -0.6
1,318,548 - PS417_05930 0.39 -0.5
1,318,703 + PS417_05930 0.56 -0.9
1,318,704 - PS417_05930 0.56 -1.5
1,318,719 - PS417_05930 0.58 -2.4
1,318,751 + PS417_05930 0.61 -1.3
1,318,752 - PS417_05930 0.61 -0.6
1,318,793 + PS417_05930 0.66 -0.8
1,318,793 + PS417_05930 0.66 +3.5
1,318,794 - PS417_05930 0.66 -3.1
1,318,797 - PS417_05930 0.66 -1.4
1,318,953 + PS417_05930 0.83 -0.2
1,318,953 + PS417_05930 0.83 +0.5
1,318,953 + PS417_05930 0.83 -0.2
1,318,955 + PS417_05930 0.83 -1.3
1,318,955 + PS417_05930 0.83 -0.0
1,319,236 + PS417_05935 0.12 +2.8
1,319,480 - PS417_05935 0.35 +1.7
1,319,480 - PS417_05935 0.35 +0.6
1,319,482 - PS417_05935 0.36 +0.6
1,319,482 - PS417_05935 0.36 -1.3
1,319,584 + PS417_05935 0.45 -0.1
1,319,816 - PS417_05935 0.68 -1.5
1,319,906 + PS417_05935 0.77 +1.7
1,319,906 + PS417_05935 0.77 -1.0
1,319,906 + PS417_05935 0.77 +1.5
1,319,907 - PS417_05935 0.77 -0.1
1,319,907 - PS417_05935 0.77 -0.1
1,319,907 - PS417_05935 0.77 +0.7
1,319,907 - PS417_05935 0.77 +1.1
1,320,285 + -0.3
1,320,286 - -0.8
1,320,375 + -0.4
1,320,376 - +2.7
1,320,597 + PS417_05940 0.21 -0.1
1,320,597 + PS417_05940 0.21 -0.3
1,320,667 + PS417_05940 0.28 -1.3
1,320,865 - PS417_05940 0.45 +0.7
1,320,907 - PS417_05940 0.48 -0.2
1,320,927 + PS417_05940 0.50 -0.6
1,320,928 - PS417_05940 0.50 +0.3
1,320,943 - PS417_05940 0.51 -1.0
1,321,045 - PS417_05940 0.60 +2.5
1,321,045 - PS417_05940 0.60 +0.0
1,321,084 - PS417_05940 0.64 +0.0
1,321,084 - PS417_05940 0.64 -0.7

Or see this region's nucleotide sequence