Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05775 and PS417_05780 overlap by 1 nucleotides PS417_05780 and PS417_05785 overlap by 8 nucleotides PS417_05785 and PS417_05790 are separated by 9 nucleotides PS417_05790 and PS417_05795 are separated by 6 nucleotides PS417_05795 and PS417_05800 overlap by 4 nucleotides PS417_05800 and PS417_05805 overlap by 8 nucleotides
PS417_05775: PS417_05775 - tail tape measure protein, at 1,289,845 to 1,291,305
_05775
PS417_05780: PS417_05780 - hypothetical protein, at 1,291,305 to 1,291,688
_05780
PS417_05785: PS417_05785 - tail protein, at 1,291,681 to 1,291,893
_05785
PS417_05790: PS417_05790 - hypothetical protein, at 1,291,903 to 1,292,910
_05790
PS417_05795: PS417_05795 - lysozyme, at 1,292,917 to 1,293,474
_05795
PS417_05800: PS417_05800 - hypothetical protein, at 1,293,471 to 1,293,686
_05800
PS417_05805: PS417_05805 - hypothetical protein, at 1,293,679 to 1,293,885
_05805
Position (kb) 1291
1292
1293 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1291.186 kb on + strand at 1291.334 kb on + strand at 1291.334 kb on + strand at 1291.363 kb on - strand, within PS417_05780 at 1291.564 kb on + strand, within PS417_05780 at 1291.687 kb on - strand at 1291.687 kb on - strand at 1291.698 kb on + strand at 1291.698 kb on + strand at 1291.698 kb on + strand at 1291.739 kb on + strand, within PS417_05785 at 1291.739 kb on + strand, within PS417_05785 at 1291.891 kb on + strand at 1291.918 kb on - strand at 1291.937 kb on - strand at 1292.115 kb on + strand, within PS417_05790 at 1292.422 kb on + strand, within PS417_05790 at 1292.422 kb on + strand, within PS417_05790 at 1292.422 kb on + strand, within PS417_05790 at 1292.563 kb on + strand, within PS417_05790 at 1292.867 kb on - strand at 1293.112 kb on + strand, within PS417_05795 at 1293.112 kb on + strand, within PS417_05795 at 1293.113 kb on - strand, within PS417_05795 at 1293.124 kb on + strand, within PS417_05795 at 1293.124 kb on + strand, within PS417_05795 at 1293.124 kb on + strand, within PS417_05795 at 1293.125 kb on - strand, within PS417_05795 at 1293.125 kb on - strand, within PS417_05795 at 1293.125 kb on - strand, within PS417_05795 at 1293.232 kb on + strand, within PS417_05795 at 1293.232 kb on + strand, within PS417_05795 at 1293.233 kb on - strand at 1293.396 kb on + strand, within PS417_05795 at 1293.397 kb on - strand, within PS417_05795 at 1293.473 kb on - strand at 1293.496 kb on + strand, within PS417_05800 at 1293.496 kb on + strand, within PS417_05800 at 1293.496 kb on + strand, within PS417_05800 at 1293.496 kb on + strand, within PS417_05800 at 1293.496 kb on + strand, within PS417_05800 at 1293.497 kb on - strand, within PS417_05800 at 1293.526 kb on + strand, within PS417_05800 at 1293.689 kb on + strand at 1293.689 kb on + strand at 1293.690 kb on - strand at 1293.699 kb on - strand at 1293.851 kb on + strand, within PS417_05805 at 1293.909 kb on + strand at 1293.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 1,291,186 + -0.6 1,291,334 + -0.4 1,291,334 + -0.0 1,291,363 - PS417_05780 0.15 -0.1 1,291,564 + PS417_05780 0.67 +0.9 1,291,687 - -2.7 1,291,687 - +2.6 1,291,698 + +1.5 1,291,698 + +0.4 1,291,698 + -0.5 1,291,739 + PS417_05785 0.27 -0.3 1,291,739 + PS417_05785 0.27 +0.6 1,291,891 + -0.0 1,291,918 - -0.7 1,291,937 - -0.1 1,292,115 + PS417_05790 0.21 -1.4 1,292,422 + PS417_05790 0.51 -1.1 1,292,422 + PS417_05790 0.51 +1.1 1,292,422 + PS417_05790 0.51 -0.9 1,292,563 + PS417_05790 0.65 -2.1 1,292,867 - -0.7 1,293,112 + PS417_05795 0.35 +0.6 1,293,112 + PS417_05795 0.35 -1.3 1,293,113 - PS417_05795 0.35 -0.4 1,293,124 + PS417_05795 0.37 +1.0 1,293,124 + PS417_05795 0.37 +2.5 1,293,124 + PS417_05795 0.37 -0.3 1,293,125 - PS417_05795 0.37 +0.7 1,293,125 - PS417_05795 0.37 -0.5 1,293,125 - PS417_05795 0.37 +0.3 1,293,232 + PS417_05795 0.56 +0.3 1,293,232 + PS417_05795 0.56 -0.4 1,293,233 - -0.2 1,293,396 + PS417_05795 0.86 +0.6 1,293,397 - PS417_05795 0.86 -1.5 1,293,473 - +1.3 1,293,496 + PS417_05800 0.12 -0.6 1,293,496 + PS417_05800 0.12 -0.9 1,293,496 + PS417_05800 0.12 -0.3 1,293,496 + PS417_05800 0.12 -1.7 1,293,496 + PS417_05800 0.12 +0.7 1,293,497 - PS417_05800 0.12 +0.1 1,293,526 + PS417_05800 0.25 -0.3 1,293,689 + +1.6 1,293,689 + +1.3 1,293,690 - -0.1 1,293,699 - +0.3 1,293,851 + PS417_05805 0.83 -0.7 1,293,909 + -0.9 1,293,909 + +1.0
Or see this region's nucleotide sequence