Strain Fitness in Pseudomonas simiae WCS417 around PS417_04855

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
1,077,878	+				+1.4
1,077,974	+				+0.9
1,078,067	+		PS417_04850	0.21	+2.1
1,078,068	-		PS417_04850	0.21	+1.2
1,078,068	-		PS417_04850	0.21	-1.4
1,078,068	-		PS417_04850	0.21	-3.4
1,078,085	+		PS417_04850	0.23	+2.5
1,078,085	+		PS417_04850	0.23	-0.7
1,078,144	-		PS417_04850	0.30	-1.6
1,078,163	+		PS417_04850	0.33	-0.2
1,078,257	-		PS417_04850	0.45	+2.9
1,078,424	+		PS417_04850	0.66	+0.0
1,078,424	+		PS417_04850	0.66	-0.7
1,078,424	+		PS417_04850	0.66	-1.3
1,078,425	-		PS417_04850	0.66	-3.0
1,078,425	-		PS417_04850	0.66	+0.5
1,078,426	+		PS417_04850	0.67	-0.5
1,078,427	-		PS417_04850	0.67	+0.1
1,078,531	+		PS417_04850	0.80	+0.6
1,078,608	-		PS417_04850	0.90	+0.2
1,078,621	-				-0.9
1,078,746	-				+0.1
1,078,746	-				-1.6
1,078,746	-				-0.3
1,078,756	+				-0.8
1,078,757	-				-0.8
1,078,757	-				-0.2
1,078,757	-				+1.1
1,078,802	-				-1.5
1,078,885	+				-0.1
1,078,885	+				-0.4
1,078,885	+				-1.4
1,078,885	+				-0.4
1,078,885	+				+0.3
1,078,886	-				-0.3
1,078,886	-				+0.1
1,078,886	-				-0.1
1,078,886	-				+0.6
1,078,886	-				+1.5
1,078,886	-				-0.3
1,078,886	-				+2.4
1,078,886	-				-2.9
1,079,084	-		PS417_04855	0.20	-0.4
1,079,141	+		PS417_04855	0.25	+1.5
1,079,142	-		PS417_04855	0.25	-0.5
1,079,169	+		PS417_04855	0.28	-1.8
1,079,169	+		PS417_04855	0.28	-0.0
1,079,169	+		PS417_04855	0.28	+0.9
1,079,193	+		PS417_04855	0.30	+0.0
1,079,255	+		PS417_04855	0.35	-1.5
1,079,255	+		PS417_04855	0.35	+0.0
1,079,255	+		PS417_04855	0.35	+0.5
1,079,256	-		PS417_04855	0.36	-1.0
1,079,256	-		PS417_04855	0.36	-0.1
1,079,256	-		PS417_04855	0.36	-1.3
1,079,256	-		PS417_04855	0.36	+0.7
1,079,256	-		PS417_04855	0.36	-0.4
1,079,256	-		PS417_04855	0.36	-0.4
1,079,256	-		PS417_04855	0.36	+0.1
1,079,256	-		PS417_04855	0.36	-0.2
1,079,256	-		PS417_04855	0.36	+0.3
1,079,259	+		PS417_04855	0.36	-0.3
1,079,259	+		PS417_04855	0.36	+0.8
1,079,259	+				+1.5
1,079,259	+				-0.5
1,079,259	+		PS417_04855	0.36	-1.1
1,079,260	-		PS417_04855	0.36	+0.6
1,079,260	-		PS417_04855	0.36	+0.4
1,079,260	-		PS417_04855	0.36	-0.6
1,079,297	+		PS417_04855	0.39	-2.2
1,079,449	+		PS417_04855	0.53	+0.3
1,079,468	+		PS417_04855	0.54	-1.8
1,079,469	-		PS417_04855	0.54	+0.2
1,079,567	+		PS417_04855	0.63	-0.4
1,079,712	-		PS417_04855	0.76	-0.5
1,080,068	-				-0.6
1,080,082	+				+0.0
1,080,088	+				-0.6
1,080,088	+				+0.0
1,080,284	+				+0.0
1,080,365	+				-0.4
1,080,365	+				+0.9
1,080,365	+				-0.0
1,080,754	+		PS417_04860	0.31	-1.4
1,080,754	+		PS417_04860	0.31	+1.6
1,080,755	-		PS417_04860	0.31	-1.7
1,080,755	-				-0.5
1,080,755	-		PS417_04860	0.31	+1.0
1,080,797	+		PS417_04860	0.34	-0.3
1,080,797	+		PS417_04860	0.34	-2.1