Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04425 and PS417_04430 are separated by 124 nucleotides PS417_04430 and PS417_04435 are separated by 2 nucleotides PS417_04435 and PS417_04440 are separated by 164 nucleotides
PS417_04425: PS417_04425 - histidinol-phosphate aminotransferase, at 983,344 to 984,396
_04425
PS417_04430: PS417_04430 - uracil transporter, at 984,521 to 985,795
_04430
PS417_04435: PS417_04435 - uracil phosphoribosyltransferase, at 985,798 to 986,436
_04435
PS417_04440: PS417_04440 - hypoxanthine-guanine phosphoribosyltransferase, at 986,601 to 987,158
_04440
Position (kb) 984
985
986 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 983.557 kb on + strand, within PS417_04425 at 983.558 kb on - strand, within PS417_04425 at 983.558 kb on - strand, within PS417_04425 at 983.558 kb on - strand, within PS417_04425 at 983.675 kb on - strand, within PS417_04425 at 983.823 kb on - strand, within PS417_04425 at 983.823 kb on - strand, within PS417_04425 at 983.894 kb on - strand, within PS417_04425 at 983.894 kb on - strand, within PS417_04425 at 983.894 kb on - strand, within PS417_04425 at 983.999 kb on + strand at 984.000 kb on - strand, within PS417_04425 at 984.124 kb on + strand, within PS417_04425 at 984.125 kb on - strand, within PS417_04425 at 984.163 kb on - strand, within PS417_04425 at 984.458 kb on + strand at 984.458 kb on + strand at 984.459 kb on - strand at 984.469 kb on + strand at 984.469 kb on + strand at 984.469 kb on + strand at 984.469 kb on + strand at 984.469 kb on + strand at 984.469 kb on + strand at 984.470 kb on - strand at 984.519 kb on - strand at 984.523 kb on - strand at 984.523 kb on - strand at 984.842 kb on - strand, within PS417_04430 at 984.900 kb on + strand, within PS417_04430 at 984.900 kb on + strand, within PS417_04430 at 984.900 kb on + strand, within PS417_04430 at 984.939 kb on + strand, within PS417_04430 at 984.940 kb on - strand, within PS417_04430 at 984.940 kb on - strand at 985.210 kb on - strand, within PS417_04430 at 985.381 kb on + strand, within PS417_04430 at 985.420 kb on + strand, within PS417_04430 at 985.420 kb on + strand, within PS417_04430 at 985.421 kb on - strand, within PS417_04430 at 985.504 kb on + strand, within PS417_04430 at 985.504 kb on + strand, within PS417_04430 at 985.505 kb on - strand, within PS417_04430 at 985.505 kb on - strand, within PS417_04430 at 985.506 kb on + strand, within PS417_04430 at 985.506 kb on + strand, within PS417_04430 at 985.506 kb on + strand, within PS417_04430 at 985.507 kb on - strand, within PS417_04430 at 985.507 kb on - strand, within PS417_04430 at 985.862 kb on + strand, within PS417_04435 at 985.862 kb on + strand, within PS417_04435 at 985.862 kb on + strand, within PS417_04435 at 985.863 kb on - strand, within PS417_04435 at 985.901 kb on + strand, within PS417_04435 at 985.939 kb on + strand, within PS417_04435 at 985.940 kb on - strand, within PS417_04435 at 986.099 kb on + strand, within PS417_04435 at 986.099 kb on + strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.100 kb on - strand, within PS417_04435 at 986.176 kb on + strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.233 kb on - strand, within PS417_04435 at 986.283 kb on - strand, within PS417_04435 at 986.315 kb on + strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.367 kb on + strand, within PS417_04435 at 986.368 kb on - strand, within PS417_04435 at 986.385 kb on + strand at 986.386 kb on - strand at 986.477 kb on + strand at 986.478 kb on - strand at 986.500 kb on + strand at 986.500 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.503 kb on - strand at 986.510 kb on + strand at 986.510 kb on + strand at 986.511 kb on - strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.555 kb on + strand at 986.555 kb on + strand at 986.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 983,557 + PS417_04425 0.20 -0.4 983,558 - PS417_04425 0.20 +0.8 983,558 - PS417_04425 0.20 -0.2 983,558 - PS417_04425 0.20 +0.3 983,675 - PS417_04425 0.31 -0.5 983,823 - PS417_04425 0.45 -1.2 983,823 - PS417_04425 0.45 -0.7 983,894 - PS417_04425 0.52 +1.6 983,894 - PS417_04425 0.52 -2.0 983,894 - PS417_04425 0.52 +2.1 983,999 + +0.5 984,000 - PS417_04425 0.62 +1.5 984,124 + PS417_04425 0.74 -1.3 984,125 - PS417_04425 0.74 -1.9 984,163 - PS417_04425 0.78 -0.5 984,458 + +2.1 984,458 + -0.6 984,459 - +0.1 984,469 + -0.9 984,469 + -0.2 984,469 + +1.5 984,469 + +1.7 984,469 + +2.1 984,469 + +0.6 984,470 - -0.3 984,519 - -0.5 984,523 - +0.8 984,523 - +1.4 984,842 - PS417_04430 0.25 +0.9 984,900 + PS417_04430 0.30 +1.4 984,900 + PS417_04430 0.30 +0.6 984,900 + PS417_04430 0.30 +0.5 984,939 + PS417_04430 0.33 -1.2 984,940 - PS417_04430 0.33 -0.1 984,940 - -0.5 985,210 - PS417_04430 0.54 +1.4 985,381 + PS417_04430 0.67 +1.5 985,420 + PS417_04430 0.71 -1.7 985,420 + PS417_04430 0.71 +0.1 985,421 - PS417_04430 0.71 -2.3 985,504 + PS417_04430 0.77 +0.0 985,504 + PS417_04430 0.77 -0.3 985,505 - PS417_04430 0.77 -0.0 985,505 - PS417_04430 0.77 -0.9 985,506 + PS417_04430 0.77 -0.1 985,506 + PS417_04430 0.77 -0.7 985,506 + PS417_04430 0.77 -1.2 985,507 - PS417_04430 0.77 -0.8 985,507 - PS417_04430 0.77 +3.5 985,862 + PS417_04435 0.10 +0.9 985,862 + PS417_04435 0.10 +1.1 985,862 + PS417_04435 0.10 +0.1 985,863 - PS417_04435 0.10 -0.6 985,901 + PS417_04435 0.16 +1.5 985,939 + PS417_04435 0.22 -2.2 985,940 - PS417_04435 0.22 -0.5 986,099 + PS417_04435 0.47 -0.1 986,099 + PS417_04435 0.47 -0.3 986,100 - PS417_04435 0.47 -0.2 986,100 - PS417_04435 0.47 -0.6 986,100 - PS417_04435 0.47 +0.2 986,100 - PS417_04435 0.47 +0.2 986,176 + PS417_04435 0.59 +0.0 986,177 - PS417_04435 0.59 -0.2 986,177 - PS417_04435 0.59 -0.8 986,177 - PS417_04435 0.59 -1.3 986,233 - PS417_04435 0.68 +1.3 986,283 - PS417_04435 0.76 +0.5 986,315 + PS417_04435 0.81 +0.2 986,316 - PS417_04435 0.81 -0.3 986,316 - PS417_04435 0.81 +0.0 986,367 + PS417_04435 0.89 -0.0 986,368 - PS417_04435 0.89 +3.5 986,385 + -0.2 986,386 - -0.2 986,477 + -0.8 986,478 - +0.7 986,500 + +0.7 986,500 + -0.5 986,502 + +0.7 986,502 + +0.4 986,502 + -0.5 986,502 + -1.8 986,502 + -0.2 986,502 + +1.2 986,503 - -0.8 986,510 + -1.0 986,510 + -0.6 986,511 - +0.3 986,513 + +0.1 986,513 + +0.2 986,513 + +0.6 986,513 + -1.1 986,514 - -0.7 986,514 - +0.5 986,514 - +1.5 986,514 - +1.1 986,555 + -1.3 986,555 + +0.7 986,655 + -0.5
Or see this region's nucleotide sequence