Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04120 and PS417_04125 are separated by 79 nucleotides PS417_04125 and PS417_04130 are separated by 148 nucleotides
PS417_04120: PS417_04120 - tryptophan--tRNA ligase, at 925,948 to 927,303
_04120
PS417_04125: PS417_04125 - ATPase, at 927,383 to 928,477
_04125
PS417_04130: PS417_04130 - AraC family transcriptional regulator, at 928,626 to 929,621
_04130
Position (kb) 927
928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 927.479 kb on + strand at 927.550 kb on + strand, within PS417_04125 at 927.890 kb on + strand, within PS417_04125 at 928.380 kb on - strand at 928.537 kb on - strand at 928.537 kb on - strand at 928.540 kb on + strand at 928.540 kb on + strand at 928.540 kb on + strand at 928.541 kb on - strand at 928.717 kb on + strand at 928.730 kb on - strand, within PS417_04130 at 928.730 kb on - strand, within PS417_04130 at 928.730 kb on - strand, within PS417_04130 at 928.805 kb on - strand, within PS417_04130 at 928.959 kb on + strand, within PS417_04130 at 928.960 kb on - strand, within PS417_04130 at 928.960 kb on - strand, within PS417_04130 at 928.996 kb on + strand, within PS417_04130 at 929.075 kb on - strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.078 kb on + strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.079 kb on - strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.080 kb on + strand, within PS417_04130 at 929.081 kb on - strand, within PS417_04130 at 929.117 kb on - strand, within PS417_04130 at 929.161 kb on - strand, within PS417_04130 at 929.161 kb on - strand, within PS417_04130 at 929.203 kb on + strand, within PS417_04130 at 929.204 kb on - strand, within PS417_04130 at 929.304 kb on + strand, within PS417_04130 at 929.304 kb on + strand, within PS417_04130 at 929.305 kb on - strand, within PS417_04130 at 929.305 kb on - strand, within PS417_04130
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 927,479 + +1.5 927,550 + PS417_04125 0.15 +0.9 927,890 + PS417_04125 0.46 +1.5 928,380 - -2.0 928,537 - +1.0 928,537 - -2.4 928,540 + +2.1 928,540 + +0.6 928,540 + +0.2 928,541 - +0.2 928,717 + -3.0 928,730 - PS417_04130 0.10 -0.1 928,730 - PS417_04130 0.10 -3.0 928,730 - PS417_04130 0.10 +0.1 928,805 - PS417_04130 0.18 +1.9 928,959 + PS417_04130 0.33 -0.4 928,960 - PS417_04130 0.34 +0.6 928,960 - PS417_04130 0.34 +0.9 928,996 + PS417_04130 0.37 +0.3 929,075 - PS417_04130 0.45 -0.3 929,078 + PS417_04130 0.45 -0.2 929,078 + PS417_04130 0.45 +0.5 929,078 + PS417_04130 0.45 +1.0 929,079 - PS417_04130 0.45 +1.0 929,079 - PS417_04130 0.45 -0.1 929,079 - PS417_04130 0.45 +1.6 929,080 + PS417_04130 0.46 -0.1 929,080 + PS417_04130 0.46 +1.1 929,080 + PS417_04130 0.46 +0.6 929,081 - PS417_04130 0.46 -1.7 929,117 - PS417_04130 0.49 +1.2 929,161 - PS417_04130 0.54 -0.2 929,161 - PS417_04130 0.54 -1.3 929,203 + PS417_04130 0.58 +2.0 929,204 - PS417_04130 0.58 -0.1 929,304 + PS417_04130 0.68 -0.1 929,304 + PS417_04130 0.68 +1.6 929,305 - PS417_04130 0.68 -0.2 929,305 - PS417_04130 0.68 +0.9
Or see this region's nucleotide sequence