Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03460 and PS417_03465 are separated by 34 nucleotides PS417_03465 and PS417_03470 overlap by 4 nucleotides PS417_03470 and PS417_03475 overlap by 14 nucleotides PS417_03475 and PS417_03480 overlap by 4 nucleotides PS417_03480 and PS417_03485 overlap by 4 nucleotides
PS417_03460: PS417_03460 - type III secretion protein HrpI, at 795,034 to 797,127
_03460
PS417_03465: PS417_03465 - type III secretion protein, at 797,162 to 798,061
_03465
PS417_03470: PS417_03470 - ATP synthase, at 798,058 to 799,416
_03470
PS417_03475: PS417_03475 - type III secretion protein, at 799,403 to 799,831
_03475
PS417_03480: PS417_03480 - type III secretion protein, at 799,828 to 800,286
_03480
PS417_03485: PS417_03485 - type III secretion protein, at 800,283 to 801,296
_03485
Position (kb) 798
799
800 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 797.404 kb on - strand, within PS417_03465 at 797.521 kb on + strand, within PS417_03465 at 797.522 kb on - strand, within PS417_03465 at 798.045 kb on - strand at 798.743 kb on + strand, within PS417_03470 at 799.015 kb on + strand, within PS417_03470 at 799.015 kb on + strand, within PS417_03470 at 799.016 kb on - strand, within PS417_03470 at 799.232 kb on - strand, within PS417_03470 at 799.402 kb on + strand at 799.402 kb on + strand at 799.403 kb on - strand at 799.617 kb on + strand, within PS417_03475 at 799.618 kb on - strand, within PS417_03475 at 799.618 kb on - strand, within PS417_03475 at 799.800 kb on + strand at 799.800 kb on + strand at 800.096 kb on - strand, within PS417_03480
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 797,404 - PS417_03465 0.27 +1.9 797,521 + PS417_03465 0.40 -1.5 797,522 - PS417_03465 0.40 +1.5 798,045 - -1.0 798,743 + PS417_03470 0.50 +3.2 799,015 + PS417_03470 0.70 -1.3 799,015 + PS417_03470 0.70 +0.6 799,016 - PS417_03470 0.70 -0.7 799,232 - PS417_03470 0.86 -2.0 799,402 + -0.8 799,402 + -0.1 799,403 - +0.3 799,617 + PS417_03475 0.50 -0.5 799,618 - PS417_03475 0.50 +0.4 799,618 - PS417_03475 0.50 -0.5 799,800 + -1.3 799,800 + -0.8 800,096 - PS417_03480 0.58 +0.5
Or see this region's nucleotide sequence