Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03335 and PS417_03340 are separated by 3 nucleotides PS417_03340 and PS417_03345 are separated by 242 nucleotides
PS417_03335: PS417_03335 - MFS transporter, at 764,408 to 765,697
_03335
PS417_03340: PS417_03340 - gluconate transporter, at 765,701 to 767,071
_03340
PS417_03345: PS417_03345 - type I secretion protein TolC, at 767,314 to 768,534
_03345
Position (kb) 765
766
767
768 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 764.744 kb on + strand, within PS417_03335 at 764.744 kb on + strand, within PS417_03335 at 764.916 kb on - strand, within PS417_03335 at 764.981 kb on + strand, within PS417_03335 at 764.982 kb on - strand, within PS417_03335 at 765.356 kb on + strand, within PS417_03335 at 765.356 kb on + strand, within PS417_03335 at 765.537 kb on - strand, within PS417_03335 at 765.537 kb on - strand, within PS417_03335 at 765.537 kb on - strand, within PS417_03335 at 765.565 kb on + strand, within PS417_03335 at 765.566 kb on - strand, within PS417_03335 at 765.655 kb on - strand at 765.655 kb on - strand at 765.757 kb on + strand at 765.757 kb on + strand at 765.758 kb on - strand at 765.758 kb on - strand at 766.017 kb on + strand, within PS417_03340 at 766.357 kb on + strand, within PS417_03340 at 766.425 kb on - strand, within PS417_03340 at 766.939 kb on + strand at 767.027 kb on - strand at 767.063 kb on + strand at 767.064 kb on - strand at 767.135 kb on + strand at 767.136 kb on - strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.162 kb on + strand at 767.162 kb on + strand at 767.162 kb on + strand at 767.162 kb on + strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.258 kb on - strand at 767.288 kb on + strand at 767.695 kb on + strand, within PS417_03345 at 767.695 kb on + strand, within PS417_03345 at 767.696 kb on - strand, within PS417_03345 at 767.696 kb on - strand, within PS417_03345 at 767.696 kb on - strand, within PS417_03345 at 767.696 kb on - strand, within PS417_03345 at 767.696 kb on - strand, within PS417_03345
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 764,744 + PS417_03335 0.26 -0.1 764,744 + PS417_03335 0.26 -1.3 764,916 - PS417_03335 0.39 -3.2 764,981 + PS417_03335 0.44 +0.3 764,982 - PS417_03335 0.44 -1.5 765,356 + PS417_03335 0.73 -0.9 765,356 + PS417_03335 0.73 -0.8 765,537 - PS417_03335 0.88 -2.1 765,537 - PS417_03335 0.88 +1.5 765,537 - PS417_03335 0.88 +2.7 765,565 + PS417_03335 0.90 -1.1 765,566 - PS417_03335 0.90 -0.0 765,655 - -0.0 765,655 - -2.1 765,757 + -1.3 765,757 + +0.9 765,758 - +0.4 765,758 - -0.5 766,017 + PS417_03340 0.23 -4.1 766,357 + PS417_03340 0.48 -0.2 766,425 - PS417_03340 0.53 -1.3 766,939 + -1.6 767,027 - -1.0 767,063 + +1.1 767,064 - -1.0 767,135 + +0.2 767,136 - +0.4 767,143 - +0.5 767,143 - -0.5 767,162 + +0.1 767,162 + +0.5 767,162 + +0.5 767,162 + +1.3 767,163 - -0.1 767,163 - +1.1 767,163 - -3.0 767,163 - -0.5 767,163 - -0.2 767,163 - +1.5 767,163 - +0.1 767,163 - -2.8 767,258 - +0.6 767,288 + +0.3 767,695 + PS417_03345 0.31 -1.9 767,695 + PS417_03345 0.31 +1.0 767,696 - PS417_03345 0.31 -2.1 767,696 - PS417_03345 0.31 +0.4 767,696 - PS417_03345 0.31 -1.7 767,696 - PS417_03345 0.31 -1.5 767,696 - PS417_03345 0.31 -1.8
Or see this region's nucleotide sequence