Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03330 and PS417_03335 are separated by 185 nucleotides PS417_03335 and PS417_03340 are separated by 3 nucleotides
PS417_03330: PS417_03330 - Short chain fatty acid transporter, at 762,804 to 764,222
_03330
PS417_03335: PS417_03335 - MFS transporter, at 764,408 to 765,697
_03335
PS417_03340: PS417_03340 - gluconate transporter, at 765,701 to 767,071
_03340
Position (kb) 764
765
766 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 763.768 kb on + strand, within PS417_03330 at 763.769 kb on - strand, within PS417_03330 at 763.987 kb on + strand, within PS417_03330 at 764.236 kb on + strand at 764.236 kb on + strand at 764.236 kb on + strand at 764.237 kb on - strand at 764.237 kb on - strand at 764.237 kb on - strand at 764.238 kb on + strand at 764.238 kb on + strand at 764.238 kb on + strand at 764.238 kb on + strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.239 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.243 kb on - strand at 764.245 kb on + strand at 764.257 kb on + strand at 764.332 kb on + strand at 764.333 kb on - strand at 764.333 kb on - strand at 764.333 kb on - strand at 764.335 kb on - strand at 764.335 kb on - strand at 764.744 kb on + strand, within PS417_03335 at 764.744 kb on + strand, within PS417_03335 at 764.916 kb on - strand, within PS417_03335 at 764.981 kb on + strand, within PS417_03335 at 764.982 kb on - strand, within PS417_03335 at 765.356 kb on + strand, within PS417_03335 at 765.356 kb on + strand, within PS417_03335 at 765.537 kb on - strand, within PS417_03335 at 765.537 kb on - strand, within PS417_03335 at 765.537 kb on - strand, within PS417_03335 at 765.565 kb on + strand, within PS417_03335 at 765.566 kb on - strand, within PS417_03335 at 765.655 kb on - strand at 765.655 kb on - strand at 765.757 kb on + strand at 765.757 kb on + strand at 765.758 kb on - strand at 765.758 kb on - strand at 766.017 kb on + strand, within PS417_03340 at 766.357 kb on + strand, within PS417_03340 at 766.425 kb on - strand, within PS417_03340
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 763,768 + PS417_03330 0.68 +0.3 763,769 - PS417_03330 0.68 -0.2 763,987 + PS417_03330 0.83 +0.3 764,236 + +0.4 764,236 + -0.4 764,236 + -1.0 764,237 - +0.6 764,237 - +0.2 764,237 - +0.5 764,238 + +1.9 764,238 + -0.8 764,238 + -1.1 764,238 + -0.9 764,239 - +1.1 764,239 - -1.6 764,239 - -0.0 764,239 - +1.1 764,239 - +0.5 764,239 - -0.8 764,239 - -0.1 764,239 - -0.5 764,239 - -0.3 764,243 - +0.1 764,243 - -1.1 764,243 - +3.8 764,243 - +1.1 764,243 - +3.1 764,243 - +1.7 764,243 - +3.4 764,245 + +1.1 764,257 + +0.5 764,332 + -1.0 764,333 - -0.4 764,333 - -1.0 764,333 - +0.3 764,335 - +2.5 764,335 - -1.3 764,744 + PS417_03335 0.26 -0.1 764,744 + PS417_03335 0.26 -1.3 764,916 - PS417_03335 0.39 -3.2 764,981 + PS417_03335 0.44 +0.3 764,982 - PS417_03335 0.44 -1.5 765,356 + PS417_03335 0.73 -0.9 765,356 + PS417_03335 0.73 -0.8 765,537 - PS417_03335 0.88 -2.1 765,537 - PS417_03335 0.88 +1.5 765,537 - PS417_03335 0.88 +2.7 765,565 + PS417_03335 0.90 -1.1 765,566 - PS417_03335 0.90 -0.0 765,655 - -0.0 765,655 - -2.1 765,757 + -1.3 765,757 + +0.9 765,758 - +0.4 765,758 - -0.5 766,017 + PS417_03340 0.23 -4.1 766,357 + PS417_03340 0.48 -0.2 766,425 - PS417_03340 0.53 -1.3
Or see this region's nucleotide sequence