Strain Fitness in Pseudomonas simiae WCS417 around PS417_03280

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03275 and PS417_03280 are separated by 61 nucleotidesPS417_03280 and PS417_03285 overlap by 4 nucleotidesPS417_03285 and PS417_03290 overlap by 11 nucleotides PS417_03275: PS417_03275 - mammalian cell entry protein, at 749,018 to 751,321 _03275 PS417_03280: PS417_03280 - chromosome partitioning protein ParA, at 751,383 to 754,223 _03280 PS417_03285: PS417_03285 - chromosome partitioning protein, at 754,220 to 754,927 _03285 PS417_03290: PS417_03290 - hypothetical protein, at 754,917 to 756,194 _03290 Position (kb) 751 752 753 754 755Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 750.630 kb on + strand, within PS417_03275at 750.656 kb on - strand, within PS417_03275at 750.713 kb on - strand, within PS417_03275at 750.796 kb on + strand, within PS417_03275at 750.824 kb on + strand, within PS417_03275at 750.825 kb on - strand, within PS417_03275at 750.980 kb on + strand, within PS417_03275at 751.070 kb on + strand, within PS417_03275at 751.070 kb on + strand, within PS417_03275at 751.071 kb on - strand, within PS417_03275at 751.457 kb on - strandat 751.457 kb on - strandat 751.480 kb on + strandat 751.480 kb on + strandat 751.480 kb on + strandat 751.481 kb on - strandat 751.639 kb on + strandat 751.643 kb on - strandat 751.643 kb on - strandat 751.696 kb on + strand, within PS417_03280at 751.696 kb on + strand, within PS417_03280at 751.696 kb on + strand, within PS417_03280at 751.697 kb on - strand, within PS417_03280at 751.697 kb on - strand, within PS417_03280at 751.697 kb on - strand, within PS417_03280at 751.865 kb on - strand, within PS417_03280at 751.976 kb on + strand, within PS417_03280at 751.977 kb on - strand, within PS417_03280at 752.106 kb on - strand, within PS417_03280at 752.189 kb on - strand, within PS417_03280at 752.189 kb on - strand, within PS417_03280at 752.262 kb on + strand, within PS417_03280at 752.272 kb on + strandat 752.272 kb on + strand, within PS417_03280at 752.272 kb on + strand, within PS417_03280at 752.273 kb on - strand, within PS417_03280at 752.273 kb on - strand, within PS417_03280at 752.327 kb on - strandat 752.665 kb on + strand, within PS417_03280at 752.666 kb on - strand, within PS417_03280at 752.841 kb on + strand, within PS417_03280at 753.019 kb on + strand, within PS417_03280at 753.019 kb on + strand, within PS417_03280at 753.020 kb on - strand, within PS417_03280at 753.020 kb on - strand, within PS417_03280at 753.020 kb on - strand, within PS417_03280at 753.184 kb on - strand, within PS417_03280at 753.514 kb on + strand, within PS417_03280at 753.514 kb on + strand, within PS417_03280at 753.514 kb on + strand, within PS417_03280at 753.534 kb on + strand, within PS417_03280at 753.535 kb on - strand, within PS417_03280at 753.535 kb on - strand, within PS417_03280at 753.746 kb on + strand, within PS417_03280at 753.794 kb on - strand, within PS417_03280at 753.988 kb on + strandat 753.988 kb on + strandat 753.988 kb on + strandat 753.989 kb on - strandat 754.036 kb on + strandat 754.036 kb on + strandat 754.106 kb on + strandat 754.126 kb on + strandat 754.126 kb on + strandat 754.127 kb on - strandat 754.378 kb on + strand, within PS417_03285at 754.570 kb on - strand, within PS417_03285at 754.743 kb on + strand, within PS417_03285at 754.746 kb on + strand, within PS417_03285at 754.747 kb on - strand, within PS417_03285at 754.834 kb on - strand, within PS417_03285at 754.934 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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750,630 + PS417_03275 0.70 +2.5
750,656 - PS417_03275 0.71 +0.5
750,713 - PS417_03275 0.74 -0.5
750,796 + PS417_03275 0.77 +0.5
750,824 + PS417_03275 0.78 -1.3
750,825 - PS417_03275 0.78 +2.1
750,980 + PS417_03275 0.85 +1.1
751,070 + PS417_03275 0.89 -1.0
751,070 + PS417_03275 0.89 -1.1
751,071 - PS417_03275 0.89 -0.1
751,457 - -0.1
751,457 - -2.8
751,480 + -1.3
751,480 + +0.6
751,480 + +1.1
751,481 - -1.5
751,639 + -0.3
751,643 - -0.4
751,643 - +0.4
751,696 + PS417_03280 0.11 +0.7
751,696 + PS417_03280 0.11 -1.7
751,696 + PS417_03280 0.11 -0.2
751,697 - PS417_03280 0.11 -2.8
751,697 - PS417_03280 0.11 +0.3
751,697 - PS417_03280 0.11 -0.7
751,865 - PS417_03280 0.17 -2.9
751,976 + PS417_03280 0.21 +0.2
751,977 - PS417_03280 0.21 -2.2
752,106 - PS417_03280 0.25 -1.7
752,189 - PS417_03280 0.28 -1.1
752,189 - PS417_03280 0.28 -0.9
752,262 + PS417_03280 0.31 -0.5
752,272 + -0.5
752,272 + PS417_03280 0.31 +0.8
752,272 + PS417_03280 0.31 +0.0
752,273 - PS417_03280 0.31 +0.7
752,273 - PS417_03280 0.31 -1.0
752,327 - +0.5
752,665 + PS417_03280 0.45 -1.1
752,666 - PS417_03280 0.45 +0.5
752,841 + PS417_03280 0.51 -0.6
753,019 + PS417_03280 0.58 +1.5
753,019 + PS417_03280 0.58 -0.7
753,020 - PS417_03280 0.58 -2.0
753,020 - PS417_03280 0.58 -1.1
753,020 - PS417_03280 0.58 +3.4
753,184 - PS417_03280 0.63 +0.6
753,514 + PS417_03280 0.75 +0.2
753,514 + PS417_03280 0.75 -0.4
753,514 + PS417_03280 0.75 -0.7
753,534 + PS417_03280 0.76 +0.3
753,535 - PS417_03280 0.76 +0.9
753,535 - PS417_03280 0.76 -0.8
753,746 + PS417_03280 0.83 -2.1
753,794 - PS417_03280 0.85 -1.1
753,988 + +0.5
753,988 + -0.3
753,988 + +1.5
753,989 - -0.5
754,036 + +0.7
754,036 + -0.0
754,106 + +0.3
754,126 + +2.1
754,126 + -1.7
754,127 - -1.7
754,378 + PS417_03285 0.22 -0.5
754,570 - PS417_03285 0.49 -1.8
754,743 + PS417_03285 0.74 -0.1
754,746 + PS417_03285 0.74 -1.1
754,747 - PS417_03285 0.74 +0.1
754,834 - PS417_03285 0.87 +0.7
754,934 + -1.8

Or see this region's nucleotide sequence