Strain Fitness in Pseudomonas simiae WCS417 around PS417_03055

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03050 and PS417_03055 overlap by 4 nucleotidesPS417_03055 and PS417_03060 overlap by 4 nucleotidesPS417_03060 and PS417_03065 are separated by 72 nucleotides PS417_03050: PS417_03050 - hypothetical protein, at 700,779 to 702,725 _03050 PS417_03055: PS417_03055 - histidine kinase, at 702,722 to 705,448 _03055 PS417_03060: PS417_03060 - pilus assembly protein TadE, at 705,445 to 705,888 _03060 PS417_03065: PS417_03065 - peptidase A24, at 705,961 to 706,410 _03065 Position (kb) 702 703 704 705 706Strain fitness (log2 ratio) -2 -1 0 1 2 3at 701.946 kb on - strand, within PS417_03050at 701.946 kb on - strand, within PS417_03050at 702.053 kb on + strand, within PS417_03050at 702.054 kb on - strand, within PS417_03050at 702.093 kb on + strand, within PS417_03050at 702.093 kb on + strand, within PS417_03050at 702.093 kb on + strand, within PS417_03050at 702.094 kb on - strand, within PS417_03050at 702.094 kb on - strand, within PS417_03050at 702.094 kb on - strand, within PS417_03050at 702.155 kb on + strand, within PS417_03050at 702.207 kb on + strand, within PS417_03050at 702.207 kb on + strand, within PS417_03050at 702.208 kb on - strand, within PS417_03050at 702.383 kb on + strand, within PS417_03050at 702.383 kb on + strand, within PS417_03050at 702.384 kb on - strand, within PS417_03050at 702.384 kb on - strand, within PS417_03050at 702.476 kb on + strand, within PS417_03050at 702.476 kb on + strand, within PS417_03050at 702.501 kb on + strand, within PS417_03050at 702.501 kb on + strand, within PS417_03050at 702.501 kb on + strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.505 kb on + strand, within PS417_03050at 702.549 kb on - strandat 702.712 kb on - strandat 702.723 kb on + strandat 702.888 kb on - strandat 702.900 kb on - strandat 703.222 kb on + strand, within PS417_03055at 703.223 kb on - strand, within PS417_03055at 703.223 kb on - strand, within PS417_03055at 703.478 kb on + strand, within PS417_03055at 703.695 kb on + strand, within PS417_03055at 703.696 kb on - strand, within PS417_03055at 703.696 kb on - strand, within PS417_03055at 703.917 kb on + strand, within PS417_03055at 703.973 kb on + strand, within PS417_03055at 703.974 kb on - strandat 703.974 kb on - strand, within PS417_03055at 704.133 kb on + strand, within PS417_03055at 704.133 kb on + strand, within PS417_03055at 704.133 kb on + strand, within PS417_03055at 704.134 kb on - strand, within PS417_03055at 704.134 kb on - strand, within PS417_03055at 704.134 kb on - strand, within PS417_03055at 704.134 kb on - strand, within PS417_03055at 704.328 kb on - strand, within PS417_03055at 704.667 kb on + strand, within PS417_03055at 704.668 kb on - strand, within PS417_03055at 704.668 kb on - strand, within PS417_03055at 704.712 kb on + strand, within PS417_03055at 704.874 kb on + strand, within PS417_03055at 704.883 kb on + strand, within PS417_03055at 705.289 kb on - strandat 705.530 kb on - strand, within PS417_03060at 705.530 kb on - strand, within PS417_03060at 705.536 kb on + strand, within PS417_03060at 705.537 kb on - strand, within PS417_03060at 705.587 kb on + strand, within PS417_03060at 705.588 kb on - strand, within PS417_03060at 705.597 kb on + strand, within PS417_03060at 705.597 kb on + strand, within PS417_03060at 705.598 kb on - strand, within PS417_03060at 705.598 kb on - strand, within PS417_03060at 705.690 kb on - strand, within PS417_03060at 705.788 kb on + strand, within PS417_03060at 705.788 kb on + strand, within PS417_03060at 705.789 kb on - strand, within PS417_03060at 705.803 kb on + strand, within PS417_03060at 705.913 kb on + strandat 705.914 kb on - strandat 705.914 kb on - strandat 705.914 kb on - strandat 705.928 kb on + strandat 705.928 kb on + strandat 705.929 kb on - strandat 706.015 kb on - strand, within PS417_03065at 706.075 kb on + strand, within PS417_03065at 706.075 kb on + strand, within PS417_03065at 706.076 kb on - strand, within PS417_03065at 706.076 kb on - strand, within PS417_03065at 706.169 kb on - strand, within PS417_03065at 706.230 kb on + strand, within PS417_03065at 706.230 kb on + strand, within PS417_03065at 706.370 kb on + strandat 706.371 kb on - strandat 706.391 kb on - strandat 706.426 kb on - strandat 706.431 kb on + strandat 706.431 kb on + strandat 706.431 kb on + strandat 706.432 kb on - strandat 706.432 kb on - strandat 706.432 kb on - strandat 706.435 kb on + strandat 706.435 kb on + strandat 706.435 kb on + strandat 706.435 kb on + strandat 706.435 kb on + strandat 706.436 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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701,946 - PS417_03050 0.60 -0.3
701,946 - PS417_03050 0.60 -1.4
702,053 + PS417_03050 0.65 +0.5
702,054 - PS417_03050 0.65 -1.0
702,093 + PS417_03050 0.67 -1.9
702,093 + PS417_03050 0.67 -0.6
702,093 + PS417_03050 0.67 -1.8
702,094 - PS417_03050 0.68 +0.0
702,094 - PS417_03050 0.68 -2.1
702,094 - PS417_03050 0.68 +2.2
702,155 + PS417_03050 0.71 -1.2
702,207 + PS417_03050 0.73 +0.2
702,207 + PS417_03050 0.73 +2.5
702,208 - PS417_03050 0.73 -1.6
702,383 + PS417_03050 0.82 +0.3
702,383 + PS417_03050 0.82 +0.6
702,384 - PS417_03050 0.82 +0.5
702,384 - PS417_03050 0.82 +0.4
702,476 + PS417_03050 0.87 +0.1
702,476 + PS417_03050 0.87 -0.1
702,501 + PS417_03050 0.88 -0.4
702,501 + PS417_03050 0.88 -0.2
702,501 + PS417_03050 0.88 -0.1
702,502 - PS417_03050 0.88 +0.3
702,502 - PS417_03050 0.88 +0.6
702,502 - PS417_03050 0.88 -1.6
702,502 - PS417_03050 0.88 -2.3
702,502 - PS417_03050 0.88 +0.2
702,502 - PS417_03050 0.88 +1.0
702,502 - PS417_03050 0.88 +0.6
702,505 + PS417_03050 0.89 -0.5
702,549 - +0.4
702,712 - -1.5
702,723 + -0.5
702,888 - +0.5
702,900 - +2.5
703,222 + PS417_03055 0.18 +0.7
703,223 - PS417_03055 0.18 +0.6
703,223 - PS417_03055 0.18 +1.8
703,478 + PS417_03055 0.28 +0.6
703,695 + PS417_03055 0.36 -0.5
703,696 - PS417_03055 0.36 -0.5
703,696 - PS417_03055 0.36 +3.1
703,917 + PS417_03055 0.44 -1.3
703,973 + PS417_03055 0.46 -1.6
703,974 - -0.1
703,974 - PS417_03055 0.46 -2.0
704,133 + PS417_03055 0.52 +0.5
704,133 + PS417_03055 0.52 -0.7
704,133 + PS417_03055 0.52 -0.5
704,134 - PS417_03055 0.52 +0.0
704,134 - PS417_03055 0.52 -1.4
704,134 - PS417_03055 0.52 -0.7
704,134 - PS417_03055 0.52 -0.6
704,328 - PS417_03055 0.59 -0.4
704,667 + PS417_03055 0.71 -0.5
704,668 - PS417_03055 0.71 -0.4
704,668 - PS417_03055 0.71 +0.7
704,712 + PS417_03055 0.73 +0.4
704,874 + PS417_03055 0.79 -1.3
704,883 + PS417_03055 0.79 -1.7
705,289 - -0.0
705,530 - PS417_03060 0.19 +0.4
705,530 - PS417_03060 0.19 +0.1
705,536 + PS417_03060 0.20 -0.1
705,537 - PS417_03060 0.21 +0.8
705,587 + PS417_03060 0.32 +0.9
705,588 - PS417_03060 0.32 -0.1
705,597 + PS417_03060 0.34 -0.1
705,597 + PS417_03060 0.34 +1.9
705,598 - PS417_03060 0.34 +0.7
705,598 - PS417_03060 0.34 +0.7
705,690 - PS417_03060 0.55 -0.8
705,788 + PS417_03060 0.77 +0.9
705,788 + PS417_03060 0.77 -0.1
705,789 - PS417_03060 0.77 -0.1
705,803 + PS417_03060 0.81 +0.2
705,913 + +0.3
705,914 - +0.9
705,914 - +0.4
705,914 - -0.2
705,928 + +1.2
705,928 + -2.1
705,929 - +0.9
706,015 - PS417_03065 0.12 -1.8
706,075 + PS417_03065 0.25 +0.5
706,075 + PS417_03065 0.25 +0.6
706,076 - PS417_03065 0.26 -0.2
706,076 - PS417_03065 0.26 -0.0
706,169 - PS417_03065 0.46 -1.7
706,230 + PS417_03065 0.60 -0.3
706,230 + PS417_03065 0.60 +1.1
706,370 + -0.3
706,371 - +0.4
706,391 - -0.2
706,426 - +1.8
706,431 + +0.4
706,431 + -1.5
706,431 + -1.3
706,432 - -0.7
706,432 - +0.5
706,432 - -1.1
706,435 + -1.0
706,435 + -0.8
706,435 + +0.2
706,435 + +0.2
706,435 + -0.0
706,436 - -1.7

Or see this region's nucleotide sequence