Strain Fitness in Pseudomonas simiae WCS417 around PS417_03050

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03040 and PS417_03045 are separated by 45 nucleotidesPS417_03045 and PS417_03050 are separated by 155 nucleotidesPS417_03050 and PS417_03055 overlap by 4 nucleotides PS417_03040: PS417_03040 - hypothetical protein, at 699,418 to 700,020 _03040 PS417_03045: PS417_03045 - hypothetical protein, at 700,066 to 700,623 _03045 PS417_03050: PS417_03050 - hypothetical protein, at 700,779 to 702,725 _03050 PS417_03055: PS417_03055 - histidine kinase, at 702,722 to 705,448 _03055 Position (kb) 700 701 702 703Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 699.826 kb on + strand, within PS417_03040at 699.826 kb on + strand, within PS417_03040at 699.826 kb on + strand, within PS417_03040at 699.827 kb on - strand, within PS417_03040at 699.853 kb on + strand, within PS417_03040at 699.853 kb on + strand, within PS417_03040at 699.853 kb on + strand, within PS417_03040at 699.854 kb on - strand, within PS417_03040at 699.854 kb on - strand, within PS417_03040at 700.084 kb on - strandat 700.381 kb on + strand, within PS417_03045at 700.432 kb on + strand, within PS417_03045at 700.689 kb on + strandat 700.690 kb on - strandat 700.735 kb on - strandat 700.735 kb on - strandat 700.735 kb on - strandat 700.750 kb on + strandat 700.750 kb on + strandat 700.751 kb on - strandat 700.751 kb on - strandat 700.859 kb on + strandat 700.860 kb on - strandat 700.917 kb on - strandat 700.989 kb on + strand, within PS417_03050at 701.418 kb on + strand, within PS417_03050at 701.573 kb on + strand, within PS417_03050at 701.609 kb on - strand, within PS417_03050at 701.946 kb on - strand, within PS417_03050at 701.946 kb on - strand, within PS417_03050at 702.053 kb on + strand, within PS417_03050at 702.054 kb on - strand, within PS417_03050at 702.093 kb on + strand, within PS417_03050at 702.093 kb on + strand, within PS417_03050at 702.093 kb on + strand, within PS417_03050at 702.094 kb on - strand, within PS417_03050at 702.094 kb on - strand, within PS417_03050at 702.094 kb on - strand, within PS417_03050at 702.155 kb on + strand, within PS417_03050at 702.207 kb on + strand, within PS417_03050at 702.207 kb on + strand, within PS417_03050at 702.208 kb on - strand, within PS417_03050at 702.383 kb on + strand, within PS417_03050at 702.383 kb on + strand, within PS417_03050at 702.384 kb on - strand, within PS417_03050at 702.384 kb on - strand, within PS417_03050at 702.476 kb on + strand, within PS417_03050at 702.476 kb on + strand, within PS417_03050at 702.501 kb on + strand, within PS417_03050at 702.501 kb on + strand, within PS417_03050at 702.501 kb on + strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.502 kb on - strand, within PS417_03050at 702.505 kb on + strand, within PS417_03050at 702.549 kb on - strandat 702.712 kb on - strandat 702.723 kb on + strandat 702.888 kb on - strandat 702.900 kb on - strandat 703.222 kb on + strand, within PS417_03055at 703.223 kb on - strand, within PS417_03055at 703.223 kb on - strand, within PS417_03055at 703.478 kb on + strand, within PS417_03055at 703.695 kb on + strand, within PS417_03055at 703.696 kb on - strand, within PS417_03055at 703.696 kb on - strand, within PS417_03055

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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699,826 + PS417_03040 0.68 -0.7
699,826 + PS417_03040 0.68 -0.9
699,826 + PS417_03040 0.68 +0.9
699,827 - PS417_03040 0.68 -0.3
699,853 + PS417_03040 0.72 -0.3
699,853 + PS417_03040 0.72 +2.0
699,853 + PS417_03040 0.72 +0.7
699,854 - PS417_03040 0.72 +0.1
699,854 - PS417_03040 0.72 +0.7
700,084 - -0.9
700,381 + PS417_03045 0.56 -3.6
700,432 + PS417_03045 0.66 -2.1
700,689 + +1.3
700,690 - -0.5
700,735 - +0.2
700,735 - +0.5
700,735 - -0.5
700,750 + +0.0
700,750 + -2.1
700,751 - -0.1
700,751 - +0.9
700,859 + -0.7
700,860 - +0.5
700,917 - -1.3
700,989 + PS417_03050 0.11 +0.4
701,418 + PS417_03050 0.33 +0.5
701,573 + PS417_03050 0.41 +0.8
701,609 - PS417_03050 0.43 +0.2
701,946 - PS417_03050 0.60 -0.3
701,946 - PS417_03050 0.60 -1.4
702,053 + PS417_03050 0.65 +0.5
702,054 - PS417_03050 0.65 -1.0
702,093 + PS417_03050 0.67 -1.9
702,093 + PS417_03050 0.67 -0.6
702,093 + PS417_03050 0.67 -1.8
702,094 - PS417_03050 0.68 +0.0
702,094 - PS417_03050 0.68 -2.1
702,094 - PS417_03050 0.68 +2.2
702,155 + PS417_03050 0.71 -1.2
702,207 + PS417_03050 0.73 +0.2
702,207 + PS417_03050 0.73 +2.5
702,208 - PS417_03050 0.73 -1.6
702,383 + PS417_03050 0.82 +0.3
702,383 + PS417_03050 0.82 +0.6
702,384 - PS417_03050 0.82 +0.5
702,384 - PS417_03050 0.82 +0.4
702,476 + PS417_03050 0.87 +0.1
702,476 + PS417_03050 0.87 -0.1
702,501 + PS417_03050 0.88 -0.4
702,501 + PS417_03050 0.88 -0.2
702,501 + PS417_03050 0.88 -0.1
702,502 - PS417_03050 0.88 +0.3
702,502 - PS417_03050 0.88 +0.6
702,502 - PS417_03050 0.88 -1.6
702,502 - PS417_03050 0.88 -2.3
702,502 - PS417_03050 0.88 +0.2
702,502 - PS417_03050 0.88 +1.0
702,502 - PS417_03050 0.88 +0.6
702,505 + PS417_03050 0.89 -0.5
702,549 - +0.4
702,712 - -1.5
702,723 + -0.5
702,888 - +0.5
702,900 - +2.5
703,222 + PS417_03055 0.18 +0.7
703,223 - PS417_03055 0.18 +0.6
703,223 - PS417_03055 0.18 +1.8
703,478 + PS417_03055 0.28 +0.6
703,695 + PS417_03055 0.36 -0.5
703,696 - PS417_03055 0.36 -0.5
703,696 - PS417_03055 0.36 +3.1

Or see this region's nucleotide sequence