Strain Fitness in Pseudomonas simiae WCS417 around PS417_27390

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
5,908,917	-				+1.2
5,909,023	+				+1.2
5,909,545	+		PS417_27385	0.68	-0.7
5,909,585	+		PS417_27385	0.73	-2.0
5,909,585	+		PS417_27385	0.73	-1.8
5,909,585	+		PS417_27385	0.73	+1.9
5,909,586	-		PS417_27385	0.73	-1.7
5,909,662	+		PS417_27385	0.83	+0.1
5,909,662	+		PS417_27385	0.83	-0.1
5,909,662	+		PS417_27385	0.83	+1.0
5,909,663	-		PS417_27385	0.83	+0.1
5,909,663	-		PS417_27385	0.83	+0.3
5,909,663	-		PS417_27385	0.83	+0.3
5,909,758	-				-0.2
5,909,992	-		PS417_27390	0.27	-0.0
5,909,992	-		PS417_27390	0.27	-2.2
5,909,992	-		PS417_27390	0.27	-1.3
5,910,384	+		PS417_27390	0.85	+2.4
5,910,385	-		PS417_27390	0.85	-0.0
5,910,405	+		PS417_27390	0.88	+0.3
5,910,405	+		PS417_27390	0.88	+2.6
5,910,405	+		PS417_27390	0.88	-1.6
5,910,405	+		PS417_27390	0.88	-0.7
5,910,406	-		PS417_27390	0.88	+0.7
5,910,406	-		PS417_27390	0.88	-0.3
5,910,406	-		PS417_27390	0.88	-0.5
5,910,406	-		PS417_27390	0.88	+2.9
5,910,406	-		PS417_27390	0.88	+0.9
5,910,406	-		PS417_27390	0.88	+1.8
5,910,406	-		PS417_27390	0.88	-1.4
5,910,413	+		PS417_27390	0.90	-3.0
5,910,413	+		PS417_27390	0.90	+0.2
5,910,645	-		PS417_27395	0.25	+0.3
5,910,725	-		PS417_27395	0.38	+0.1
5,910,725	-		PS417_27395	0.38	-1.0
5,910,875	+		PS417_27395	0.61	-0.2
5,910,880	-		PS417_27395	0.62	-1.3
5,910,880	-		PS417_27395	0.62	+0.7
5,911,015	+				+1.5
5,911,038	-		PS417_27395	0.86	+1.9
5,911,145	+				-2.3
5,911,145	+				+0.4
5,911,146	-				-1.3
5,911,146	-				-2.1
5,911,146	-				+0.1
5,911,149	+				+2.4
5,911,149	+				+1.5
5,911,149	+				-1.0
5,911,149	+				-1.9
5,911,150	-				-0.7
5,911,150	-				-1.4
5,911,150	-				-0.3
5,911,150	-				+0.2
5,911,150	-				-0.6
5,911,153	-				-1.9
5,911,153	-				-0.5
5,911,168	+				-1.3
5,911,168	+				+4.3
5,911,168	+				+0.2
5,911,168	+				+1.4
5,911,169	-				-1.1
5,911,169	-				-1.0
5,911,311	+		PS417_27400	0.26	+0.4