Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27010 and PS417_27015 are separated by 137 nucleotides PS417_27015 and PS417_27020 are separated by 33 nucleotides PS417_27020 and PS417_27025 are separated by 120 nucleotides
PS417_27010: PS417_27010 - threonine dehydratase, at 5,832,441 to 5,833,955
_27010
PS417_27015: PS417_27015 - ribose 5-phosphate isomerase, at 5,834,093 to 5,834,764
_27015
PS417_27020: PS417_27020 - DNA-binding protein, at 5,834,798 to 5,835,712
_27020
PS417_27025: PS417_27025 - DNA-binding protein, at 5,835,833 to 5,836,759
_27025
Position (kb) 5834
5835
5836 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5833.942 kb on + strand at 5833.943 kb on - strand at 5834.048 kb on + strand at 5834.048 kb on + strand at 5834.050 kb on + strand at 5834.050 kb on + strand at 5834.050 kb on + strand at 5834.051 kb on - strand at 5834.051 kb on - strand at 5834.823 kb on + strand at 5834.823 kb on + strand at 5834.823 kb on + strand at 5834.823 kb on + strand at 5834.823 kb on + strand at 5834.824 kb on - strand at 5834.824 kb on - strand at 5834.824 kb on - strand at 5834.824 kb on - strand at 5834.824 kb on - strand at 5835.024 kb on + strand, within PS417_27020 at 5835.096 kb on + strand, within PS417_27020 at 5835.138 kb on + strand, within PS417_27020 at 5835.139 kb on - strand, within PS417_27020 at 5835.139 kb on - strand, within PS417_27020 at 5835.195 kb on + strand, within PS417_27020 at 5835.336 kb on + strand, within PS417_27020 at 5835.336 kb on + strand, within PS417_27020 at 5835.337 kb on - strand, within PS417_27020 at 5835.395 kb on - strand, within PS417_27020 at 5835.448 kb on + strand, within PS417_27020 at 5835.483 kb on + strand, within PS417_27020 at 5835.483 kb on + strand, within PS417_27020 at 5835.483 kb on + strand, within PS417_27020 at 5835.484 kb on - strand, within PS417_27020 at 5835.522 kb on - strand, within PS417_27020 at 5835.746 kb on + strand at 5835.747 kb on - strand at 5835.766 kb on - strand at 5835.766 kb on - strand at 5835.772 kb on - strand at 5835.772 kb on - strand at 5835.823 kb on - strand at 5835.834 kb on + strand at 5835.882 kb on + strand at 5835.882 kb on + strand at 5835.883 kb on - strand at 5835.883 kb on - strand at 5835.883 kb on - strand at 5836.150 kb on + strand, within PS417_27025 at 5836.257 kb on + strand, within PS417_27025 at 5836.257 kb on + strand, within PS417_27025 at 5836.257 kb on + strand, within PS417_27025 at 5836.258 kb on - strand, within PS417_27025 at 5836.258 kb on - strand, within PS417_27025 at 5836.258 kb on - strand, within PS417_27025 at 5836.494 kb on + strand, within PS417_27025 at 5836.494 kb on + strand, within PS417_27025 at 5836.495 kb on - strand, within PS417_27025 at 5836.561 kb on - strand, within PS417_27025 at 5836.561 kb on - strand, within PS417_27025 at 5836.575 kb on - strand, within PS417_27025
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 5,833,942 + -0.4 5,833,943 - +2.9 5,834,048 + -1.6 5,834,048 + -0.1 5,834,050 + -1.0 5,834,050 + -0.7 5,834,050 + +0.4 5,834,051 - +3.2 5,834,051 - -0.1 5,834,823 + +0.1 5,834,823 + -0.9 5,834,823 + -0.2 5,834,823 + +0.0 5,834,823 + +0.5 5,834,824 - -0.3 5,834,824 - -0.9 5,834,824 - +0.1 5,834,824 - -0.7 5,834,824 - -2.7 5,835,024 + PS417_27020 0.25 -0.0 5,835,096 + PS417_27020 0.33 -0.5 5,835,138 + PS417_27020 0.37 -0.4 5,835,139 - PS417_27020 0.37 +0.1 5,835,139 - PS417_27020 0.37 -0.5 5,835,195 + PS417_27020 0.43 -2.6 5,835,336 + PS417_27020 0.59 +1.4 5,835,336 + PS417_27020 0.59 -0.0 5,835,337 - PS417_27020 0.59 +1.0 5,835,395 - PS417_27020 0.65 -0.8 5,835,448 + PS417_27020 0.71 +0.1 5,835,483 + PS417_27020 0.75 +1.8 5,835,483 + PS417_27020 0.75 +0.3 5,835,483 + PS417_27020 0.75 +1.4 5,835,484 - PS417_27020 0.75 +4.2 5,835,522 - PS417_27020 0.79 +2.5 5,835,746 + -1.4 5,835,747 - +0.1 5,835,766 - +1.0 5,835,766 - +0.0 5,835,772 - -1.1 5,835,772 - -1.0 5,835,823 - +0.3 5,835,834 + -0.3 5,835,882 + +2.4 5,835,882 + +1.1 5,835,883 - -0.6 5,835,883 - +0.9 5,835,883 - +1.4 5,836,150 + PS417_27025 0.34 +1.4 5,836,257 + PS417_27025 0.46 +1.1 5,836,257 + PS417_27025 0.46 -0.8 5,836,257 + PS417_27025 0.46 -0.5 5,836,258 - PS417_27025 0.46 +0.1 5,836,258 - PS417_27025 0.46 +0.8 5,836,258 - PS417_27025 0.46 -0.4 5,836,494 + PS417_27025 0.71 +0.8 5,836,494 + PS417_27025 0.71 -2.2 5,836,495 - PS417_27025 0.71 +1.2 5,836,561 - PS417_27025 0.79 +0.0 5,836,561 - PS417_27025 0.79 -1.9 5,836,575 - PS417_27025 0.80 +0.4
Or see this region's nucleotide sequence