Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02675 and PS417_02680 are separated by 786 nucleotides PS417_02680 and PS417_02685 are separated by 179 nucleotides
PS417_02675: PS417_02675 - ABC transporter ATP-binding protein, at 612,335 to 613,051
_02675
PS417_02680: PS417_02680 - hypothetical protein, at 613,838 to 614,605
_02680
PS417_02685: PS417_02685 - cation diffusion facilitator family transporter, at 614,785 to 615,690
_02685
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 613.049 kb on + strand at 613.050 kb on - strand at 613.117 kb on - strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.239 kb on + strand at 613.240 kb on - strand at 613.430 kb on + strand at 613.430 kb on + strand at 613.430 kb on + strand at 613.430 kb on + strand at 613.431 kb on - strand at 613.431 kb on - strand at 613.431 kb on - strand at 613.432 kb on + strand at 613.432 kb on + strand at 613.433 kb on - strand at 613.443 kb on + strand at 613.443 kb on + strand at 613.444 kb on - strand at 613.444 kb on - strand at 613.477 kb on - strand at 613.556 kb on + strand at 613.556 kb on + strand at 613.556 kb on + strand at 613.560 kb on + strand at 613.560 kb on + strand at 613.560 kb on + strand at 613.560 kb on + strand at 613.561 kb on - strand at 613.561 kb on - strand at 613.619 kb on - strand at 613.638 kb on + strand at 613.638 kb on + strand at 613.639 kb on - strand at 613.686 kb on + strand at 613.855 kb on + strand at 613.856 kb on - strand at 614.106 kb on + strand, within PS417_02680 at 614.267 kb on + strand, within PS417_02680 at 614.291 kb on + strand, within PS417_02680 at 614.291 kb on + strand, within PS417_02680 at 614.292 kb on - strand, within PS417_02680 at 614.439 kb on - strand, within PS417_02680 at 614.451 kb on - strand, within PS417_02680 at 614.603 kb on + strand at 614.603 kb on + strand at 614.603 kb on + strand at 614.604 kb on - strand at 614.604 kb on - strand at 614.604 kb on - strand at 614.718 kb on + strand at 614.718 kb on + strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.723 kb on + strand at 614.738 kb on - strand at 615.061 kb on + strand, within PS417_02685 at 615.061 kb on + strand, within PS417_02685 at 615.061 kb on + strand, within PS417_02685 at 615.062 kb on - strand, within PS417_02685 at 615.062 kb on - strand, within PS417_02685 at 615.134 kb on - strand, within PS417_02685 at 615.166 kb on + strand, within PS417_02685 at 615.166 kb on + strand, within PS417_02685 at 615.167 kb on - strand, within PS417_02685 at 615.175 kb on + strand, within PS417_02685 at 615.176 kb on - strand, within PS417_02685 at 615.328 kb on + strand, within PS417_02685 at 615.328 kb on + strand, within PS417_02685 at 615.329 kb on - strand, within PS417_02685 at 615.413 kb on + strand, within PS417_02685 at 615.413 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.506 kb on - strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 613,049 + +0.8 613,050 - -0.2 613,117 - -0.1 613,237 + -3.6 613,237 + -1.9 613,237 + +0.6 613,238 - -1.9 613,238 - +0.4 613,238 - +2.1 613,238 - -0.4 613,239 + +0.1 613,240 - -0.4 613,430 + +0.1 613,430 + -0.5 613,430 + -0.9 613,430 + +0.5 613,431 - +0.8 613,431 - +0.5 613,431 - -1.7 613,432 + -2.4 613,432 + -0.1 613,433 - -0.2 613,443 + +0.9 613,443 + +0.2 613,444 - +0.7 613,444 - -0.2 613,477 - +0.9 613,556 + -1.7 613,556 + -0.1 613,556 + +0.7 613,560 + +2.5 613,560 + -1.3 613,560 + -0.3 613,560 + +0.9 613,561 - -0.6 613,561 - -0.3 613,619 - -0.3 613,638 + +0.2 613,638 + -1.6 613,639 - +0.9 613,686 + -0.1 613,855 + +0.4 613,856 - -0.7 614,106 + PS417_02680 0.35 +0.1 614,267 + PS417_02680 0.56 -1.3 614,291 + PS417_02680 0.59 -1.1 614,291 + PS417_02680 0.59 -1.0 614,292 - PS417_02680 0.59 -2.1 614,439 - PS417_02680 0.78 -0.8 614,451 - PS417_02680 0.80 +0.1 614,603 + -0.5 614,603 + +0.7 614,603 + +0.0 614,604 - +0.8 614,604 - -0.8 614,604 - -1.3 614,718 + +0.3 614,718 + -0.4 614,719 - -0.3 614,719 - -0.1 614,719 - +0.6 614,719 - -2.1 614,719 - +1.5 614,719 - +2.1 614,719 - -1.3 614,723 + -1.2 614,738 - -1.2 615,061 + PS417_02685 0.30 +0.4 615,061 + PS417_02685 0.30 -0.2 615,061 + PS417_02685 0.30 +1.3 615,062 - PS417_02685 0.31 -1.1 615,062 - PS417_02685 0.31 -0.0 615,134 - PS417_02685 0.39 -2.3 615,166 + PS417_02685 0.42 +0.5 615,166 + PS417_02685 0.42 +1.5 615,167 - PS417_02685 0.42 -0.2 615,175 + PS417_02685 0.43 -0.1 615,176 - PS417_02685 0.43 -0.7 615,328 + PS417_02685 0.60 +1.5 615,328 + PS417_02685 0.60 -0.0 615,329 - PS417_02685 0.60 -0.9 615,413 + PS417_02685 0.69 +1.5 615,413 + PS417_02685 0.69 +0.7 615,496 + PS417_02685 0.78 -3.6 615,496 + PS417_02685 0.78 -2.8 615,496 + PS417_02685 0.78 -1.1 615,496 + PS417_02685 0.78 +1.1 615,497 - PS417_02685 0.79 +1.5 615,497 - PS417_02685 0.79 -0.1 615,497 - PS417_02685 0.79 -1.1 615,497 - PS417_02685 0.79 -0.9 615,497 - PS417_02685 0.79 +0.2 615,506 - PS417_02685 0.80 -2.7 615,542 + PS417_02685 0.84 -0.1 615,542 + PS417_02685 0.84 +0.4 615,542 + PS417_02685 0.84 +0.6 615,543 - PS417_02685 0.84 -1.9 615,543 - PS417_02685 0.84 -2.9 615,543 - PS417_02685 0.84 +0.1 615,543 - PS417_02685 0.84 +0.0 615,543 - PS417_02685 0.84 +0.5
Or see this region's nucleotide sequence