Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02665 and PS417_02670 overlap by 4 nucleotides PS417_02670 and PS417_02675 overlap by 4 nucleotides PS417_02675 and PS417_02680 are separated by 786 nucleotides
PS417_02665: PS417_02665 - branched-chain amino acid ABC transporter permease, at 610,189 to 611,466
_02665
PS417_02670: PS417_02670 - ABC transporter, at 611,463 to 612,338
_02670
PS417_02675: PS417_02675 - ABC transporter ATP-binding protein, at 612,335 to 613,051
_02675
PS417_02680: PS417_02680 - hypothetical protein, at 613,838 to 614,605
_02680
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 611.449 kb on - strand at 611.449 kb on - strand at 611.628 kb on + strand, within PS417_02670 at 611.628 kb on + strand, within PS417_02670 at 611.758 kb on - strand, within PS417_02670 at 611.961 kb on + strand, within PS417_02670 at 611.962 kb on - strand, within PS417_02670 at 612.307 kb on - strand at 612.307 kb on - strand at 612.335 kb on - strand at 612.335 kb on - strand at 612.347 kb on - strand at 612.374 kb on + strand at 612.377 kb on + strand at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.727 kb on + strand, within PS417_02675 at 613.049 kb on + strand at 613.050 kb on - strand at 613.117 kb on - strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.239 kb on + strand at 613.240 kb on - strand at 613.430 kb on + strand at 613.430 kb on + strand at 613.430 kb on + strand at 613.430 kb on + strand at 613.431 kb on - strand at 613.431 kb on - strand at 613.431 kb on - strand at 613.432 kb on + strand at 613.432 kb on + strand at 613.433 kb on - strand at 613.443 kb on + strand at 613.443 kb on + strand at 613.444 kb on - strand at 613.444 kb on - strand at 613.477 kb on - strand at 613.556 kb on + strand at 613.556 kb on + strand at 613.556 kb on + strand at 613.560 kb on + strand at 613.560 kb on + strand at 613.560 kb on + strand at 613.560 kb on + strand at 613.561 kb on - strand at 613.561 kb on - strand at 613.619 kb on - strand at 613.638 kb on + strand at 613.638 kb on + strand at 613.639 kb on - strand at 613.686 kb on + strand at 613.855 kb on + strand at 613.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 611,449 - -0.4 611,449 - +2.1 611,628 + PS417_02670 0.19 +1.9 611,628 + PS417_02670 0.19 +0.0 611,758 - PS417_02670 0.34 -1.7 611,961 + PS417_02670 0.57 +2.1 611,962 - PS417_02670 0.57 +1.6 612,307 - -1.9 612,307 - +1.5 612,335 - -0.3 612,335 - -0.8 612,347 - +0.1 612,374 + -1.3 612,377 + -1.4 612,561 - PS417_02675 0.32 -1.9 612,561 - PS417_02675 0.32 +0.0 612,561 - PS417_02675 0.32 +4.9 612,561 - PS417_02675 0.32 +0.4 612,727 + PS417_02675 0.55 +1.0 613,049 + +0.8 613,050 - -0.2 613,117 - -0.1 613,237 + -3.6 613,237 + -1.9 613,237 + +0.6 613,238 - -1.9 613,238 - +0.4 613,238 - +2.1 613,238 - -0.4 613,239 + +0.1 613,240 - -0.4 613,430 + +0.1 613,430 + -0.5 613,430 + -0.9 613,430 + +0.5 613,431 - +0.8 613,431 - +0.5 613,431 - -1.7 613,432 + -2.4 613,432 + -0.1 613,433 - -0.2 613,443 + +0.9 613,443 + +0.2 613,444 - +0.7 613,444 - -0.2 613,477 - +0.9 613,556 + -1.7 613,556 + -0.1 613,556 + +0.7 613,560 + +2.5 613,560 + -1.3 613,560 + -0.3 613,560 + +0.9 613,561 - -0.6 613,561 - -0.3 613,619 - -0.3 613,638 + +0.2 613,638 + -1.6 613,639 - +0.9 613,686 + -0.1 613,855 + +0.4 613,856 - -0.7
Or see this region's nucleotide sequence