Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24960 and PS417_24965 are separated by 81 nucleotides
PS417_24960: PS417_24960 - transposase, at 5,412,105 to 5,413,682
_24960
PS417_24965: PS417_24965 - transposase, at 5,413,764 to 5,414,099
_24965
Position (kb) 5413
5414
5415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 5412.788 kb on - strand, within PS417_24960 at 5412.788 kb on - strand, within PS417_24960 at 5412.788 kb on - strand, within PS417_24960 at 5412.788 kb on - strand, within PS417_24960 at 5412.838 kb on + strand, within PS417_24960 at 5412.838 kb on + strand, within PS417_24960 at 5412.900 kb on + strand, within PS417_24960 at 5412.901 kb on - strand, within PS417_24960 at 5412.901 kb on - strand, within PS417_24960 at 5412.918 kb on + strand, within PS417_24960 at 5413.060 kb on + strand, within PS417_24960 at 5413.061 kb on - strand, within PS417_24960 at 5413.061 kb on - strand, within PS417_24960 at 5413.103 kb on + strand, within PS417_24960 at 5413.104 kb on - strand, within PS417_24960 at 5413.181 kb on + strand, within PS417_24960 at 5413.213 kb on + strand, within PS417_24960 at 5413.337 kb on + strand, within PS417_24960 at 5413.338 kb on - strand, within PS417_24960 at 5413.550 kb on + strand at 5413.654 kb on - strand at 5413.654 kb on - strand at 5413.736 kb on + strand at 5413.981 kb on + strand at 5413.981 kb on + strand, within PS417_24965 at 5413.981 kb on + strand at 5413.982 kb on - strand at 5413.982 kb on - strand, within PS417_24965 at 5413.982 kb on - strand, within PS417_24965 at 5414.157 kb on - strand at 5414.178 kb on + strand at 5414.178 kb on + strand at 5414.184 kb on - strand at 5414.213 kb on + strand at 5414.213 kb on + strand at 5414.237 kb on + strand at 5414.237 kb on + strand at 5414.237 kb on + strand at 5414.237 kb on + strand at 5414.400 kb on + strand at 5414.400 kb on + strand at 5414.401 kb on - strand at 5414.401 kb on - strand at 5414.455 kb on - strand at 5414.494 kb on + strand at 5414.526 kb on + strand at 5414.584 kb on + strand at 5414.584 kb on + strand at 5414.585 kb on - strand at 5414.585 kb on - strand at 5414.612 kb on + strand at 5414.612 kb on + strand at 5414.613 kb on - strand at 5414.613 kb on - strand at 5414.724 kb on + strand at 5414.724 kb on + strand at 5414.724 kb on + strand at 5414.725 kb on - strand at 5414.725 kb on - strand at 5414.725 kb on - strand at 5414.725 kb on - strand at 5414.804 kb on - strand at 5414.876 kb on - strand at 5415.090 kb on + strand at 5415.090 kb on + strand at 5415.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 5,412,788 - PS417_24960 0.43 -0.2 5,412,788 - PS417_24960 0.43 +0.7 5,412,788 - PS417_24960 0.43 +0.9 5,412,788 - PS417_24960 0.43 +1.6 5,412,838 + PS417_24960 0.46 -0.3 5,412,838 + PS417_24960 0.46 +0.4 5,412,900 + PS417_24960 0.50 +2.2 5,412,901 - PS417_24960 0.50 +0.3 5,412,901 - PS417_24960 0.50 -0.1 5,412,918 + PS417_24960 0.52 -0.0 5,413,060 + PS417_24960 0.61 +0.4 5,413,061 - PS417_24960 0.61 +0.7 5,413,061 - PS417_24960 0.61 -2.6 5,413,103 + PS417_24960 0.63 -0.6 5,413,104 - PS417_24960 0.63 +1.9 5,413,181 + PS417_24960 0.68 +0.8 5,413,213 + PS417_24960 0.70 +0.4 5,413,337 + PS417_24960 0.78 -1.1 5,413,338 - PS417_24960 0.78 -1.7 5,413,550 + +0.2 5,413,654 - +6.0 5,413,654 - +0.1 5,413,736 + +0.4 5,413,981 + -0.5 5,413,981 + PS417_24965 0.65 +1.0 5,413,981 + +3.1 5,413,982 - +2.1 5,413,982 - PS417_24965 0.65 +3.1 5,413,982 - PS417_24965 0.65 -0.1 5,414,157 - +0.4 5,414,178 + -1.2 5,414,178 + +0.4 5,414,184 - -1.0 5,414,213 + +0.3 5,414,213 + -1.3 5,414,237 + -2.1 5,414,237 + -0.1 5,414,237 + +0.3 5,414,237 + -0.8 5,414,400 + +0.4 5,414,400 + -0.1 5,414,401 - -0.9 5,414,401 - -1.3 5,414,455 - -0.1 5,414,494 + -0.1 5,414,526 + +0.3 5,414,584 + +0.1 5,414,584 + -0.5 5,414,585 - -2.4 5,414,585 - -1.3 5,414,612 + +0.2 5,414,612 + -0.2 5,414,613 - -0.8 5,414,613 - -0.4 5,414,724 + +0.1 5,414,724 + -3.7 5,414,724 + -1.3 5,414,725 - +1.6 5,414,725 - +0.9 5,414,725 - +0.1 5,414,725 - -1.8 5,414,804 - +0.4 5,414,876 - -0.3 5,415,090 + +0.3 5,415,090 + +0.2 5,415,095 - -1.5
Or see this region's nucleotide sequence