Strain Fitness in Pseudomonas simiae WCS417 around PS417_23580

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
5,097,840	+				+0.7
5,097,840	+				+1.5
5,097,840	+				-1.1
5,097,841	-				+0.5
5,097,867	+				-0.4
5,097,867	+				-0.1
5,097,868	-				+2.5
5,097,868	-				-0.3
5,097,869	+				+0.1
5,097,869	+				-1.5
5,097,869	+				-1.5
5,097,869	+				-1.3
5,097,869	+				-0.3
5,097,869	+				-0.8
5,097,870	-				+0.8
5,097,870	-				-0.5
5,097,870	-				-0.7
5,097,870	-				-1.1
5,097,870	-				+1.5
5,097,884	-				+1.5
5,097,899	+				-0.5
5,097,909	+				-0.2
5,097,910	-				-0.5
5,097,956	+		PS417_23570	0.13	-0.1
5,097,956	+		PS417_23570	0.13	-0.1
5,097,956	+		PS417_23570	0.13	+1.4
5,097,956	+		PS417_23570	0.13	-1.0
5,097,957	-		PS417_23570	0.13	-0.2
5,097,957	-		PS417_23570	0.13	+0.8
5,098,068	+		PS417_23570	0.46	+0.0
5,098,256	+				-2.7
5,098,257	-				+1.0
5,098,421	-				+1.3
5,098,421	-				-0.8
5,098,456	+		PS417_23575	0.16	-4.0
5,098,456	+		PS417_23575	0.16	-1.4
5,098,618	+		PS417_23575	0.79	-1.0
5,098,691	+				+1.5
5,098,691	+				-0.0
5,098,692	-				+0.5
5,098,692	-				+1.5
5,098,785	+				+1.5
5,098,786	-				+0.5
5,098,791	+				-1.5
5,098,791	+				-2.3
5,098,792	-				-2.2
5,098,905	-		PS417_23580	0.16	-0.5
5,099,045	+		PS417_23580	0.39	-3.5
5,099,412	+				-3.4
5,099,413	-				-2.7
5,099,441	-				-0.5
5,099,681	+				-0.4
5,099,682	-				-1.5
5,099,682	-				-1.4
5,099,871	+		PS417_23585	0.10	+0.0
5,099,871	+		PS417_23585	0.10	-0.4
5,099,871	+		PS417_23585	0.10	+0.8
5,099,871	+		PS417_23585	0.10	-1.0
5,099,871	+		PS417_23585	0.10	+0.1
5,099,872	-		PS417_23585	0.10	-0.1
5,099,872	-		PS417_23585	0.10	+1.1
5,099,872	-		PS417_23585	0.10	-0.7
5,099,872	-		PS417_23585	0.10	-2.2
5,099,872	-		PS417_23585	0.10	-1.7
5,099,872	-		PS417_23585	0.10	+0.3
5,099,911	+		PS417_23585	0.12	-0.0
5,099,911	+		PS417_23585	0.12	-0.2
5,099,912	-		PS417_23585	0.12	-0.5
5,100,021	+		PS417_23585	0.18	+0.8
5,100,060	-		PS417_23585	0.20	+1.1
5,100,229	+		PS417_23585	0.29	+0.1
5,100,238	-		PS417_23585	0.29	-1.3
5,100,402	+		PS417_23585	0.38	-3.4