Strain Fitness in Pseudomonas simiae WCS417 around PS417_22390

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
4,850,670	-		PS417_22385	0.32	+0.8
4,850,670	-		PS417_22385	0.32	-1.3
4,850,670	-		PS417_22385	0.32	+0.4
4,850,838	+		PS417_22385	0.48	-0.2
4,850,838	+		PS417_22385	0.48	-0.8
4,850,839	-		PS417_22385	0.48	+0.6
4,850,839	-		PS417_22385	0.48	-0.8
4,850,839	-		PS417_22385	0.48	-0.8
4,850,839	-		PS417_22385	0.48	-0.4
4,850,869	+		PS417_22385	0.51	-2.8
4,850,973	+		PS417_22385	0.60	+0.4
4,850,973	+		PS417_22385	0.60	+1.0
4,850,973	+		PS417_22385	0.60	-2.3
4,850,973	+		PS417_22385	0.60	-0.2
4,850,974	-		PS417_22385	0.61	+0.1
4,850,974	-		PS417_22385	0.61	+0.7
4,851,243	+		PS417_22385	0.86	-0.1
4,851,243	+		PS417_22385	0.86	-0.3
4,851,243	+		PS417_22385	0.86	+0.4
4,851,244	-		PS417_22385	0.86	+0.1
4,851,244	-		PS417_22385	0.86	-0.1
4,851,433	+				+1.3
4,851,433	+				-2.2
4,851,433	+				+1.6
4,851,547	+				+0.4
4,851,547	+				-1.4
4,851,749	+				-0.4
4,851,749	+				-1.3
4,851,750	-				-0.8
4,851,800	+		PS417_22390	0.11	+1.1
4,851,800	+		PS417_22390	0.11	-0.7
4,851,801	-		PS417_22390	0.11	+3.6
4,851,899	+		PS417_22390	0.17	+0.3
4,851,944	+		PS417_22390	0.20	-0.6
4,851,944	+		PS417_22390	0.20	-0.3
4,851,945	-		PS417_22390	0.20	+0.0
4,851,950	+		PS417_22390	0.20	+0.2
4,851,950	+		PS417_22390	0.20	+0.3
4,851,951	-		PS417_22390	0.21	+0.1
4,851,951	-		PS417_22390	0.21	-2.6
4,852,068	+		PS417_22390	0.28	+0.0
4,852,103	+		PS417_22390	0.30	+1.6
4,852,104	-		PS417_22390	0.30	-0.6
4,852,350	-		PS417_22390	0.46	-0.2
4,852,350	-		PS417_22390	0.46	-0.3
4,852,350	-		PS417_22390	0.46	+0.2
4,853,042	+				+2.0
4,853,043	-		PS417_22390	0.90	+2.6
4,853,043	-		PS417_22390	0.90	+0.1
4,853,043	-		PS417_22390	0.90	-0.6
4,853,238	+				+0.4
4,853,239	-				-0.4
4,853,455	+				-0.4
4,853,455	+				-0.4
4,853,456	-				+0.2
4,853,459	+				-0.2
4,853,459	+				-0.0
4,853,460	-				+0.8
4,853,460	-				-0.6
4,853,460	-				-0.2
4,853,479	+				-0.6
4,853,716	-				-0.6
4,853,836	+		PS417_22400	0.21	+0.3
4,853,837	-		PS417_22400	0.21	-0.5
4,853,908	+		PS417_22400	0.32	+1.2
4,853,908	+		PS417_22400	0.32	-0.7
4,853,909	-		PS417_22400	0.32	-1.8
4,854,086	+		PS417_22400	0.58	+1.2
4,854,087	-		PS417_22400	0.59	+0.3
4,854,087	-		PS417_22400	0.59	-0.5
4,854,087	-		PS417_22400	0.59	+0.8
4,854,087	-		PS417_22400	0.59	+0.4
4,854,087	-		PS417_22400	0.59	-1.0
4,854,087	-		PS417_22400	0.59	-0.7
4,854,186	+		PS417_22400	0.73	-1.9
4,854,187	-		PS417_22400	0.73	+0.3