Strain Fitness in Pseudomonas simiae WCS417 around PS417_01995

Experiment: JP1 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_01990 and PS417_01995 are separated by 98 nucleotidesPS417_01995 and PS417_02000 overlap by 21 nucleotides PS417_01990: PS417_01990 - cell division protein, at 441,508 to 443,079 _01990 PS417_01995: PS417_01995 - hypothetical protein, at 443,178 to 443,453 _01995 PS417_02000: PS417_02000 - glutamate synthase, at 443,433 to 447,878 _02000 Position (kb) 443 444Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 442.287 kb on + strand, within PS417_01990at 442.298 kb on + strand, within PS417_01990at 442.901 kb on - strand, within PS417_01990at 442.951 kb on + strandat 443.149 kb on + strandat 443.149 kb on + strandat 443.149 kb on + strandat 443.236 kb on + strand, within PS417_01995at 443.255 kb on + strand, within PS417_01995at 443.317 kb on - strand, within PS417_01995at 443.317 kb on - strand, within PS417_01995at 443.520 kb on - strandat 443.686 kb on - strandat 443.916 kb on - strand, within PS417_02000at 443.964 kb on + strand, within PS417_02000at 443.997 kb on + strand, within PS417_02000at 443.998 kb on - strand, within PS417_02000at 443.998 kb on - strand, within PS417_02000at 443.998 kb on - strand, within PS417_02000at 443.999 kb on + strand, within PS417_02000at 444.037 kb on - strand, within PS417_02000at 444.105 kb on - strand, within PS417_02000at 444.412 kb on - strand, within PS417_02000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
remove
442,287 + PS417_01990 0.50 +3.8
442,298 + PS417_01990 0.50 +0.7
442,901 - PS417_01990 0.89 +1.4
442,951 + +1.0
443,149 + -0.0
443,149 + -0.4
443,149 + +0.0
443,236 + PS417_01995 0.21 -3.3
443,255 + PS417_01995 0.28 -0.6
443,317 - PS417_01995 0.50 +1.8
443,317 - PS417_01995 0.50 +0.9
443,520 - -0.3
443,686 - -1.0
443,916 - PS417_02000 0.11 +0.7
443,964 + PS417_02000 0.12 +1.8
443,997 + PS417_02000 0.13 -1.3
443,998 - PS417_02000 0.13 -2.8
443,998 - PS417_02000 0.13 +1.7
443,998 - PS417_02000 0.13 -0.8
443,999 + PS417_02000 0.13 +0.1
444,037 - PS417_02000 0.14 +0.8
444,105 - PS417_02000 0.15 -0.5
444,412 - PS417_02000 0.22 +0.3

Or see this region's nucleotide sequence