Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01970 and PS417_01975 are separated by 69 nucleotides PS417_01975 and PS417_01980 are separated by 4 nucleotides PS417_01980 and PS417_01985 are separated by 125 nucleotides
PS417_01970: PS417_01970 - pilus assembly protein, at 437,394 to 438,353
_01970
PS417_01975: PS417_01975 - pilus assembly protein PilQ, at 438,423 to 439,748
_01975
PS417_01980: PS417_01980 - shikimate kinase, at 439,753 to 440,271
_01980
PS417_01985: PS417_01985 - 3-dehydroquinate synthase, at 440,397 to 441,497
_01985
Position (kb) 438
439
440 Strain fitness (log2 ratio) -2
-1
0
1
2 at 437.453 kb on - strand at 437.517 kb on + strand, within PS417_01970 at 437.517 kb on + strand, within PS417_01970 at 437.518 kb on - strand, within PS417_01970 at 437.950 kb on - strand, within PS417_01970 at 437.980 kb on + strand, within PS417_01970 at 438.181 kb on + strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.338 kb on - strand at 438.448 kb on + strand at 438.479 kb on + strand at 438.495 kb on + strand at 438.496 kb on - strand at 438.816 kb on + strand, within PS417_01975 at 438.816 kb on + strand, within PS417_01975 at 438.816 kb on + strand, within PS417_01975 at 439.209 kb on + strand, within PS417_01975 at 439.210 kb on - strand, within PS417_01975 at 439.482 kb on + strand, within PS417_01975 at 439.483 kb on - strand, within PS417_01975 at 439.540 kb on + strand, within PS417_01975 at 439.606 kb on + strand, within PS417_01975 at 439.611 kb on - strand, within PS417_01975 at 439.611 kb on - strand, within PS417_01975 at 439.611 kb on - strand, within PS417_01975 at 439.637 kb on + strand at 439.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 437,453 - -0.1 437,517 + PS417_01970 0.13 -0.8 437,517 + PS417_01970 0.13 -1.3 437,518 - PS417_01970 0.13 -0.6 437,950 - PS417_01970 0.58 -0.3 437,980 + PS417_01970 0.61 -0.7 438,181 + PS417_01970 0.82 -1.4 438,182 - PS417_01970 0.82 -0.7 438,182 - PS417_01970 0.82 +0.8 438,338 - -1.8 438,448 + -0.5 438,479 + -2.3 438,495 + +0.5 438,496 - +0.7 438,816 + PS417_01975 0.30 +2.3 438,816 + PS417_01975 0.30 +0.3 438,816 + PS417_01975 0.30 -0.2 439,209 + PS417_01975 0.59 -1.8 439,210 - PS417_01975 0.59 +0.7 439,482 + PS417_01975 0.80 +2.7 439,483 - PS417_01975 0.80 -0.0 439,540 + PS417_01975 0.84 -0.0 439,606 + PS417_01975 0.89 -2.5 439,611 - PS417_01975 0.90 -0.5 439,611 - PS417_01975 0.90 +0.5 439,611 - PS417_01975 0.90 -0.5 439,637 + -1.8 439,715 + -2.4
Or see this region's nucleotide sequence