Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01950 and PS417_01955 are separated by 191 nucleotides PS417_01955 and PS417_01960 are separated by 218 nucleotides PS417_01960 and PS417_01965 overlap by 4 nucleotides
PS417_01950: PS417_01950 - malate dehydrogenase, at 432,052 to 433,320
_01950
PS417_01955: PS417_01955 - peptidase, at 433,512 to 435,974
_01955
PS417_01960: PS417_01960 - pilus assembly protein, at 436,193 to 436,846
_01960
PS417_01965: PS417_01965 - fimbriae biosynthesis protein, at 436,843 to 437,397
_01965
Position (kb) 433
434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 432.697 kb on + strand, within PS417_01950 at 432.698 kb on - strand at 432.698 kb on - strand, within PS417_01950 at 432.751 kb on + strand, within PS417_01950 at 433.174 kb on + strand, within PS417_01950 at 433.175 kb on - strand, within PS417_01950 at 433.318 kb on + strand at 433.385 kb on - strand at 433.513 kb on + strand at 433.514 kb on - strand at 433.627 kb on + strand at 433.745 kb on + strand at 433.748 kb on - strand at 433.748 kb on - strand at 433.816 kb on + strand, within PS417_01955 at 433.852 kb on + strand, within PS417_01955 at 433.984 kb on + strand, within PS417_01955 at 433.984 kb on + strand, within PS417_01955 at 433.985 kb on - strand, within PS417_01955 at 433.985 kb on - strand, within PS417_01955 at 433.985 kb on - strand, within PS417_01955 at 434.233 kb on + strand, within PS417_01955 at 434.357 kb on - strand, within PS417_01955 at 434.422 kb on + strand, within PS417_01955 at 434.423 kb on - strand at 434.423 kb on - strand, within PS417_01955 at 434.497 kb on + strand, within PS417_01955 at 434.572 kb on + strand, within PS417_01955 at 434.572 kb on + strand, within PS417_01955 at 434.629 kb on + strand, within PS417_01955 at 435.131 kb on - strand, within PS417_01955 at 435.131 kb on - strand, within PS417_01955 at 435.183 kb on - strand, within PS417_01955 at 435.185 kb on - strand, within PS417_01955 at 435.185 kb on - strand, within PS417_01955 at 435.217 kb on + strand at 435.218 kb on - strand, within PS417_01955 at 435.284 kb on - strand, within PS417_01955 at 435.421 kb on + strand, within PS417_01955 at 435.422 kb on - strand, within PS417_01955 at 435.424 kb on + strand, within PS417_01955 at 435.424 kb on + strand, within PS417_01955 at 435.469 kb on + strand, within PS417_01955 at 435.484 kb on + strand, within PS417_01955 at 435.555 kb on - strand, within PS417_01955 at 435.555 kb on - strand, within PS417_01955 at 435.707 kb on + strand, within PS417_01955 at 435.884 kb on + strand at 436.007 kb on - strand at 436.082 kb on + strand at 436.083 kb on - strand at 436.166 kb on - strand at 436.166 kb on - strand at 436.311 kb on - strand, within PS417_01960 at 436.375 kb on - strand, within PS417_01960 at 436.536 kb on - strand, within PS417_01960 at 436.536 kb on - strand, within PS417_01960 at 436.617 kb on + strand, within PS417_01960 at 436.617 kb on + strand, within PS417_01960 at 436.618 kb on - strand at 436.618 kb on - strand, within PS417_01960 at 436.862 kb on + strand at 436.862 kb on + strand at 436.863 kb on - strand at 436.903 kb on + strand, within PS417_01965 at 436.907 kb on + strand, within PS417_01965 at 436.907 kb on + strand, within PS417_01965
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 432,697 + PS417_01950 0.51 -1.1 432,698 - -0.1 432,698 - PS417_01950 0.51 +0.3 432,751 + PS417_01950 0.55 -1.9 433,174 + PS417_01950 0.88 +1.2 433,175 - PS417_01950 0.88 -0.1 433,318 + -2.7 433,385 - +0.5 433,513 + -2.2 433,514 - +1.1 433,627 + +2.8 433,745 + +2.8 433,748 - +2.2 433,748 - +1.4 433,816 + PS417_01955 0.12 +2.1 433,852 + PS417_01955 0.14 +2.4 433,984 + PS417_01955 0.19 +1.1 433,984 + PS417_01955 0.19 +1.5 433,985 - PS417_01955 0.19 +2.7 433,985 - PS417_01955 0.19 +2.5 433,985 - PS417_01955 0.19 +2.1 434,233 + PS417_01955 0.29 +3.5 434,357 - PS417_01955 0.34 +2.6 434,422 + PS417_01955 0.37 +1.3 434,423 - +5.7 434,423 - PS417_01955 0.37 +1.5 434,497 + PS417_01955 0.40 +2.5 434,572 + PS417_01955 0.43 -1.1 434,572 + PS417_01955 0.43 +2.5 434,629 + PS417_01955 0.45 +2.5 435,131 - PS417_01955 0.66 +1.9 435,131 - PS417_01955 0.66 -0.1 435,183 - PS417_01955 0.68 +2.4 435,185 - PS417_01955 0.68 +0.9 435,185 - PS417_01955 0.68 +0.9 435,217 + +1.9 435,218 - PS417_01955 0.69 +2.0 435,284 - PS417_01955 0.72 +1.6 435,421 + PS417_01955 0.78 +3.6 435,422 - PS417_01955 0.78 +3.2 435,424 + PS417_01955 0.78 +2.8 435,424 + PS417_01955 0.78 +2.0 435,469 + PS417_01955 0.79 +2.4 435,484 + PS417_01955 0.80 +2.0 435,555 - PS417_01955 0.83 +2.5 435,555 - PS417_01955 0.83 +2.4 435,707 + PS417_01955 0.89 +1.2 435,884 + +2.6 436,007 - -2.9 436,082 + +0.9 436,083 - +0.1 436,166 - +0.2 436,166 - +3.9 436,311 - PS417_01960 0.18 +2.1 436,375 - PS417_01960 0.28 -0.1 436,536 - PS417_01960 0.52 -1.2 436,536 - PS417_01960 0.52 +2.2 436,617 + PS417_01960 0.65 -0.3 436,617 + PS417_01960 0.65 +1.9 436,618 - -1.5 436,618 - PS417_01960 0.65 +1.5 436,862 + +2.2 436,862 + +0.2 436,863 - +2.5 436,903 + PS417_01965 0.11 +0.9 436,907 + PS417_01965 0.12 -1.5 436,907 + PS417_01965 0.12 +2.6
Or see this region's nucleotide sequence