Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19635 and PS417_19645 are separated by 565 nucleotides PS417_19645 and PS417_19650 are separated by 0 nucleotides PS417_19650 and PS417_19655 are separated by 81 nucleotides
PS417_19635: PS417_19635 - lipid kinase, at 4,269,758 to 4,270,678
_19635
PS417_19645: PS417_19645 - chemotaxis protein, at 4,271,244 to 4,271,636
_19645
PS417_19650: PS417_19650 - chemotaxis protein CheW, at 4,271,637 to 4,272,119
_19650
PS417_19655: PS417_19655 - chemotaxis protein CheW, at 4,272,201 to 4,272,989
_19655
Position (kb) 4271
4272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4270.244 kb on - strand, within PS417_19635 at 4270.510 kb on - strand, within PS417_19635 at 4270.619 kb on + strand at 4270.619 kb on + strand at 4270.619 kb on + strand at 4270.619 kb on + strand at 4270.620 kb on - strand at 4270.620 kb on - strand at 4270.688 kb on - strand at 4270.775 kb on + strand at 4270.775 kb on + strand at 4270.775 kb on + strand at 4270.805 kb on + strand at 4270.806 kb on - strand at 4270.851 kb on + strand at 4270.924 kb on + strand at 4270.925 kb on - strand at 4270.928 kb on + strand at 4270.929 kb on - strand at 4270.929 kb on - strand at 4270.929 kb on - strand at 4270.935 kb on + strand at 4270.937 kb on + strand at 4270.937 kb on + strand at 4270.937 kb on + strand at 4270.938 kb on - strand at 4270.946 kb on + strand at 4270.947 kb on - strand at 4270.997 kb on + strand at 4270.998 kb on - strand at 4271.107 kb on - strand at 4271.227 kb on - strand at 4271.234 kb on - strand at 4271.234 kb on - strand at 4271.237 kb on + strand at 4271.237 kb on + strand at 4271.237 kb on + strand at 4271.253 kb on - strand at 4271.566 kb on + strand, within PS417_19645 at 4271.566 kb on + strand, within PS417_19645 at 4271.566 kb on + strand, within PS417_19645 at 4271.965 kb on + strand, within PS417_19650 at 4271.965 kb on + strand, within PS417_19650 at 4271.966 kb on - strand, within PS417_19650 at 4272.040 kb on + strand, within PS417_19650 at 4272.040 kb on + strand, within PS417_19650 at 4272.040 kb on + strand, within PS417_19650 at 4272.066 kb on - strand, within PS417_19650 at 4272.120 kb on - strand at 4272.146 kb on + strand at 4272.147 kb on - strand at 4272.159 kb on + strand at 4272.159 kb on + strand at 4272.160 kb on - strand at 4272.166 kb on - strand at 4272.287 kb on + strand, within PS417_19655 at 4272.287 kb on + strand, within PS417_19655 at 4272.288 kb on - strand, within PS417_19655 at 4272.288 kb on - strand, within PS417_19655 at 4272.288 kb on - strand, within PS417_19655 at 4272.583 kb on + strand, within PS417_19655
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 4,270,244 - PS417_19635 0.53 -1.8 4,270,510 - PS417_19635 0.82 -1.8 4,270,619 + -0.6 4,270,619 + -0.2 4,270,619 + -2.0 4,270,619 + -2.1 4,270,620 - -1.9 4,270,620 - +1.1 4,270,688 - +1.4 4,270,775 + +0.3 4,270,775 + -2.5 4,270,775 + -0.9 4,270,805 + -0.7 4,270,806 - -1.2 4,270,851 + -2.4 4,270,924 + -2.7 4,270,925 - +0.4 4,270,928 + -2.8 4,270,929 - -0.8 4,270,929 - -2.6 4,270,929 - -1.7 4,270,935 + -1.3 4,270,937 + -2.3 4,270,937 + -1.8 4,270,937 + -2.3 4,270,938 - -2.6 4,270,946 + -0.3 4,270,947 - -3.2 4,270,997 + -2.8 4,270,998 - -2.6 4,271,107 - -0.5 4,271,227 - +0.7 4,271,234 - -1.2 4,271,234 - -2.3 4,271,237 + -2.3 4,271,237 + -3.6 4,271,237 + -0.9 4,271,253 - -0.4 4,271,566 + PS417_19645 0.82 -1.4 4,271,566 + PS417_19645 0.82 -2.4 4,271,566 + PS417_19645 0.82 -0.6 4,271,965 + PS417_19650 0.68 +0.9 4,271,965 + PS417_19650 0.68 -0.6 4,271,966 - PS417_19650 0.68 -0.8 4,272,040 + PS417_19650 0.83 +0.8 4,272,040 + PS417_19650 0.83 +2.0 4,272,040 + PS417_19650 0.83 +0.9 4,272,066 - PS417_19650 0.89 -0.6 4,272,120 - +1.2 4,272,146 + +0.6 4,272,147 - -0.2 4,272,159 + +1.2 4,272,159 + -1.8 4,272,160 - +0.4 4,272,166 - -3.0 4,272,287 + PS417_19655 0.11 -0.7 4,272,287 + PS417_19655 0.11 +0.9 4,272,288 - PS417_19655 0.11 -2.8 4,272,288 - PS417_19655 0.11 -1.8 4,272,288 - PS417_19655 0.11 -0.9 4,272,583 + PS417_19655 0.48 -0.9
Or see this region's nucleotide sequence