Strain Fitness in Pseudomonas simiae WCS417 around PS417_19110

Experiment: JP1 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19090 and PS417_19095 overlap by 1 nucleotidesPS417_19095 and PS417_19100 are separated by 65 nucleotidesPS417_19100 and PS417_19105 are separated by 15 nucleotidesPS417_19105 and PS417_19110 are separated by 82 nucleotidesPS417_19110 and PS417_19115 are separated by 90 nucleotidesPS417_19115 and PS417_19120 overlap by 9 nucleotidesPS417_19120 and PS417_19125 are separated by 60 nucleotides PS417_19090: PS417_19090 - hypothetical protein, at 4,128,692 to 4,128,880 _19090 PS417_19095: PS417_19095 - hypothetical protein, at 4,128,880 to 4,129,164 _19095 PS417_19100: PS417_19100 - hypothetical protein, at 4,129,230 to 4,129,460 _19100 PS417_19105: PS417_19105 - hypothetical protein, at 4,129,476 to 4,129,697 _19105 PS417_19110: PS417_19110 - hypothetical protein, at 4,129,780 to 4,130,079 _19110 PS417_19115: PS417_19115 - hypothetical protein, at 4,130,170 to 4,130,520 _19115 PS417_19120: PS417_19120 - tRNA-Asn, at 4,130,512 to 4,130,587 _19120 PS417_19125: PS417_19125 - LysR family transcriptional regulator, at 4,130,648 to 4,131,544 _19125 Position (kb) 4129 4130 4131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4128.795 kb on - strand, within PS417_19090at 4128.920 kb on + strand, within PS417_19095at 4128.926 kb on - strand, within PS417_19095at 4129.036 kb on - strandat 4129.040 kb on - strand, within PS417_19095at 4129.151 kb on - strandat 4129.507 kb on + strand, within PS417_19105at 4129.508 kb on - strand, within PS417_19105at 4129.528 kb on + strand, within PS417_19105at 4129.528 kb on + strand, within PS417_19105at 4129.529 kb on - strand, within PS417_19105at 4129.529 kb on - strand, within PS417_19105at 4129.529 kb on - strand, within PS417_19105at 4129.529 kb on - strand, within PS417_19105at 4129.532 kb on + strand, within PS417_19105at 4129.532 kb on + strand, within PS417_19105at 4129.532 kb on + strand, within PS417_19105at 4129.532 kb on + strand, within PS417_19105at 4129.532 kb on + strand, within PS417_19105at 4129.532 kb on + strand, within PS417_19105at 4129.533 kb on - strand, within PS417_19105at 4129.533 kb on - strand, within PS417_19105at 4129.533 kb on - strand, within PS417_19105at 4129.533 kb on - strand, within PS417_19105at 4129.533 kb on - strand, within PS417_19105at 4129.534 kb on + strandat 4129.535 kb on - strand, within PS417_19105at 4129.548 kb on + strand, within PS417_19105at 4129.578 kb on - strand, within PS417_19105at 4129.644 kb on + strandat 4129.645 kb on - strand, within PS417_19105at 4129.646 kb on + strand, within PS417_19105at 4129.672 kb on + strandat 4129.672 kb on + strand, within PS417_19105at 4129.672 kb on + strand, within PS417_19105at 4129.673 kb on - strand, within PS417_19105at 4129.673 kb on - strand, within PS417_19105at 4129.695 kb on + strandat 4129.695 kb on + strandat 4129.832 kb on - strand, within PS417_19110at 4129.832 kb on - strand, within PS417_19110at 4129.848 kb on + strand, within PS417_19110at 4129.848 kb on + strand, within PS417_19110at 4129.849 kb on - strand, within PS417_19110at 4129.852 kb on + strand, within PS417_19110at 4129.852 kb on + strand, within PS417_19110at 4129.925 kb on + strand, within PS417_19110at 4129.926 kb on - strand, within PS417_19110at 4129.926 kb on - strand, within PS417_19110at 4129.959 kb on + strand, within PS417_19110at 4129.959 kb on + strand, within PS417_19110at 4130.001 kb on + strand, within PS417_19110at 4130.001 kb on + strand, within PS417_19110at 4130.014 kb on + strand, within PS417_19110at 4130.157 kb on + strandat 4130.158 kb on - strandat 4130.158 kb on - strandat 4130.158 kb on - strandat 4130.158 kb on - strandat 4130.161 kb on + strandat 4130.161 kb on + strandat 4130.162 kb on - strandat 4130.162 kb on - strandat 4130.206 kb on - strand, within PS417_19115at 4130.206 kb on - strand, within PS417_19115at 4130.206 kb on - strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.211 kb on + strand, within PS417_19115at 4130.212 kb on - strand, within PS417_19115at 4130.212 kb on - strandat 4130.212 kb on - strand, within PS417_19115at 4130.212 kb on - strand, within PS417_19115at 4130.212 kb on - strand, within PS417_19115at 4130.212 kb on - strand, within PS417_19115at 4130.213 kb on + strand, within PS417_19115at 4130.214 kb on - strand, within PS417_19115at 4130.214 kb on - strand, within PS417_19115at 4130.214 kb on - strand, within PS417_19115at 4130.342 kb on - strand, within PS417_19115at 4130.551 kb on + strand, within PS417_19120at 4130.811 kb on + strand, within PS417_19125at 4131.013 kb on + strand, within PS417_19125at 4131.014 kb on - strand, within PS417_19125

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Per-strain Table

Position Strand Gene LocusTag Fraction JP1 MOI 1
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4,128,795 - PS417_19090 0.54 +1.5
4,128,920 + PS417_19095 0.14 -0.6
4,128,926 - PS417_19095 0.16 -0.9
4,129,036 - +2.5
4,129,040 - PS417_19095 0.56 -1.9
4,129,151 - +0.4
4,129,507 + PS417_19105 0.14 +0.7
4,129,508 - PS417_19105 0.14 +0.1
4,129,528 + PS417_19105 0.23 -0.6
4,129,528 + PS417_19105 0.23 +0.3
4,129,529 - PS417_19105 0.24 +1.4
4,129,529 - PS417_19105 0.24 +0.2
4,129,529 - PS417_19105 0.24 +0.7
4,129,529 - PS417_19105 0.24 -0.9
4,129,532 + PS417_19105 0.25 -0.3
4,129,532 + PS417_19105 0.25 -0.3
4,129,532 + PS417_19105 0.25 +0.6
4,129,532 + PS417_19105 0.25 +0.8
4,129,532 + PS417_19105 0.25 +0.2
4,129,532 + PS417_19105 0.25 +0.1
4,129,533 - PS417_19105 0.26 +0.4
4,129,533 - PS417_19105 0.26 -0.4
4,129,533 - PS417_19105 0.26 -0.6
4,129,533 - PS417_19105 0.26 -1.3
4,129,533 - PS417_19105 0.26 +1.1
4,129,534 + +1.4
4,129,535 - PS417_19105 0.27 +0.5
4,129,548 + PS417_19105 0.32 -1.2
4,129,578 - PS417_19105 0.46 -0.2
4,129,644 + -0.2
4,129,645 - PS417_19105 0.76 +1.4
4,129,646 + PS417_19105 0.77 -2.7
4,129,672 + -0.2
4,129,672 + PS417_19105 0.88 +0.6
4,129,672 + PS417_19105 0.88 -0.6
4,129,673 - PS417_19105 0.89 -0.8
4,129,673 - PS417_19105 0.89 -0.1
4,129,695 + -3.0
4,129,695 + -1.4
4,129,832 - PS417_19110 0.17 +0.1
4,129,832 - PS417_19110 0.17 +1.9
4,129,848 + PS417_19110 0.23 +2.0
4,129,848 + PS417_19110 0.23 +0.0
4,129,849 - PS417_19110 0.23 -0.3
4,129,852 + PS417_19110 0.24 +2.0
4,129,852 + PS417_19110 0.24 +0.1
4,129,925 + PS417_19110 0.48 -0.6
4,129,926 - PS417_19110 0.49 -1.6
4,129,926 - PS417_19110 0.49 -0.6
4,129,959 + PS417_19110 0.60 -0.9
4,129,959 + PS417_19110 0.60 +0.8
4,130,001 + PS417_19110 0.74 +0.0
4,130,001 + PS417_19110 0.74 +0.2
4,130,014 + PS417_19110 0.78 +0.7
4,130,157 + -0.1
4,130,158 - -1.6
4,130,158 - -1.6
4,130,158 - -1.5
4,130,158 - +1.5
4,130,161 + -0.9
4,130,161 + +0.5
4,130,162 - -2.5
4,130,162 - -0.2
4,130,206 - PS417_19115 0.10 -2.3
4,130,206 - PS417_19115 0.10 -0.7
4,130,206 - PS417_19115 0.10 +0.5
4,130,211 + PS417_19115 0.12 -0.6
4,130,211 + PS417_19115 0.12 -0.2
4,130,211 + PS417_19115 0.12 -0.2
4,130,211 + PS417_19115 0.12 -2.6
4,130,211 + PS417_19115 0.12 -0.8
4,130,211 + PS417_19115 0.12 -2.5
4,130,212 - PS417_19115 0.12 -1.8
4,130,212 - -1.2
4,130,212 - PS417_19115 0.12 -1.0
4,130,212 - PS417_19115 0.12 +0.5
4,130,212 - PS417_19115 0.12 -1.4
4,130,212 - PS417_19115 0.12 -0.4
4,130,213 + PS417_19115 0.12 +0.5
4,130,214 - PS417_19115 0.13 +0.4
4,130,214 - PS417_19115 0.13 +0.2
4,130,214 - PS417_19115 0.13 -0.2
4,130,342 - PS417_19115 0.49 -3.7
4,130,551 + PS417_19120 0.51 -0.9
4,130,811 + PS417_19125 0.18 -1.6
4,131,013 + PS417_19125 0.41 -0.6
4,131,014 - PS417_19125 0.41 +0.4

Or see this region's nucleotide sequence