Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18490 and PS417_18495 overlap by 4 nucleotides PS417_18495 and PS417_18500 are separated by 258 nucleotides PS417_18500 and PS417_18505 are separated by 184 nucleotides PS417_18505 and PS417_18510 are separated by 197 nucleotides PS417_18510 and PS417_18515 are separated by 105 nucleotides PS417_18515 and PS417_18520 are separated by 55 nucleotides PS417_18520 and PS417_18525 are separated by 107 nucleotides
PS417_18490: PS417_18490 - hypothetical protein, at 4,019,170 to 4,019,418
_18490
PS417_18495: PS417_18495 - hypothetical protein, at 4,019,415 to 4,019,876
_18495
PS417_18500: PS417_18500 - tRNA-Val, at 4,020,135 to 4,020,211
_18500
PS417_18505: PS417_18505 - gamma-glutamylputrescine oxidoreductase, at 4,020,396 to 4,021,679
_18505
PS417_18510: PS417_18510 - tRNA-Asp, at 4,021,877 to 4,021,953
_18510
PS417_18515: PS417_18515 - tRNA-Asp, at 4,022,059 to 4,022,135
_18515
PS417_18520: PS417_18520 - tRNA-Val, at 4,022,191 to 4,022,266
_18520
PS417_18525: PS417_18525 - oxidoreductase, at 4,022,374 to 4,023,153
_18525
Position (kb) 4020
4021
4022 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4019.416 kb on + strand at 4019.512 kb on + strand, within PS417_18495 at 4019.598 kb on + strand, within PS417_18495 at 4019.633 kb on - strand, within PS417_18495 at 4019.832 kb on + strand at 4019.833 kb on - strand at 4019.833 kb on - strand at 4019.833 kb on - strand at 4019.843 kb on + strand at 4019.870 kb on + strand at 4019.871 kb on - strand at 4019.871 kb on - strand at 4019.914 kb on + strand at 4019.914 kb on + strand at 4019.933 kb on + strand at 4019.953 kb on + strand at 4020.281 kb on - strand at 4020.352 kb on + strand at 4020.511 kb on - strand at 4020.630 kb on + strand, within PS417_18505 at 4020.631 kb on - strand, within PS417_18505 at 4020.906 kb on + strand, within PS417_18505 at 4020.906 kb on + strand, within PS417_18505 at 4020.906 kb on + strand, within PS417_18505 at 4020.906 kb on + strand at 4020.906 kb on + strand, within PS417_18505 at 4020.907 kb on - strand at 4020.907 kb on - strand at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.907 kb on - strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand, within PS417_18505 at 4020.910 kb on + strand at 4020.911 kb on - strand, within PS417_18505 at 4020.911 kb on - strand, within PS417_18505 at 4020.911 kb on - strand, within PS417_18505 at 4020.998 kb on + strand, within PS417_18505 at 4020.999 kb on - strand, within PS417_18505 at 4021.006 kb on - strand at 4021.006 kb on - strand, within PS417_18505 at 4021.055 kb on - strand, within PS417_18505 at 4021.110 kb on + strand, within PS417_18505 at 4021.176 kb on - strand, within PS417_18505 at 4021.225 kb on - strand, within PS417_18505 at 4021.245 kb on + strand, within PS417_18505 at 4021.245 kb on + strand, within PS417_18505 at 4021.246 kb on - strand, within PS417_18505 at 4021.258 kb on - strand, within PS417_18505 at 4021.261 kb on - strand, within PS417_18505 at 4021.308 kb on + strand, within PS417_18505 at 4021.470 kb on + strand, within PS417_18505 at 4021.471 kb on - strand, within PS417_18505 at 4021.471 kb on - strand at 4021.471 kb on - strand, within PS417_18505 at 4021.473 kb on + strand, within PS417_18505 at 4021.507 kb on - strand, within PS417_18505 at 4021.647 kb on + strand at 4022.233 kb on - strand, within PS417_18520 at 4022.259 kb on - strand at 4022.259 kb on - strand at 4022.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 4,019,416 + -0.3 4,019,512 + PS417_18495 0.21 +1.4 4,019,598 + PS417_18495 0.40 -0.4 4,019,633 - PS417_18495 0.47 +0.4 4,019,832 + -1.7 4,019,833 - +1.9 4,019,833 - +1.4 4,019,833 - +0.3 4,019,843 + -0.9 4,019,870 + -0.5 4,019,871 - +0.4 4,019,871 - -1.6 4,019,914 + +2.4 4,019,914 + -0.8 4,019,933 + -1.4 4,019,953 + +1.0 4,020,281 - +2.8 4,020,352 + -1.5 4,020,511 - -1.9 4,020,630 + PS417_18505 0.18 -0.9 4,020,631 - PS417_18505 0.18 -0.3 4,020,906 + PS417_18505 0.40 -3.4 4,020,906 + PS417_18505 0.40 +0.6 4,020,906 + PS417_18505 0.40 +0.6 4,020,906 + +0.4 4,020,906 + PS417_18505 0.40 -0.9 4,020,907 - -0.9 4,020,907 - -0.6 4,020,907 - PS417_18505 0.40 +0.0 4,020,907 - PS417_18505 0.40 -2.0 4,020,907 - PS417_18505 0.40 +0.4 4,020,907 - PS417_18505 0.40 +0.6 4,020,907 - PS417_18505 0.40 +0.9 4,020,907 - PS417_18505 0.40 +1.2 4,020,907 - PS417_18505 0.40 -0.1 4,020,910 + PS417_18505 0.40 +0.4 4,020,910 + PS417_18505 0.40 +2.3 4,020,910 + PS417_18505 0.40 +1.3 4,020,910 + PS417_18505 0.40 +0.0 4,020,910 + PS417_18505 0.40 +2.1 4,020,910 + +0.8 4,020,911 - PS417_18505 0.40 -1.0 4,020,911 - PS417_18505 0.40 -1.2 4,020,911 - PS417_18505 0.40 -0.4 4,020,998 + PS417_18505 0.47 +1.6 4,020,999 - PS417_18505 0.47 +0.3 4,021,006 - +1.4 4,021,006 - PS417_18505 0.48 +0.5 4,021,055 - PS417_18505 0.51 +2.5 4,021,110 + PS417_18505 0.56 +1.6 4,021,176 - PS417_18505 0.61 -0.2 4,021,225 - PS417_18505 0.65 +3.0 4,021,245 + PS417_18505 0.66 +1.3 4,021,245 + PS417_18505 0.66 -0.3 4,021,246 - PS417_18505 0.66 -0.1 4,021,258 - PS417_18505 0.67 -1.7 4,021,261 - PS417_18505 0.67 -0.9 4,021,308 + PS417_18505 0.71 +0.4 4,021,470 + PS417_18505 0.84 +0.6 4,021,471 - PS417_18505 0.84 -0.2 4,021,471 - +1.4 4,021,471 - PS417_18505 0.84 +0.4 4,021,473 + PS417_18505 0.84 +1.7 4,021,507 - PS417_18505 0.87 +0.7 4,021,647 + +1.7 4,022,233 - PS417_18520 0.55 -1.2 4,022,259 - -0.4 4,022,259 - -1.7 4,022,385 - -0.4
Or see this region's nucleotide sequence