Strain Fitness in Pseudomonas simiae WCS417 around PS417_18180

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
3,959,097	+		PS417_18175	0.30	+1.4
3,959,098	-		PS417_18175	0.31	+0.5
3,959,398	+		PS417_18175	0.56	-0.6
3,959,406	+		PS417_18175	0.57	+1.6
3,959,406	+		PS417_18175	0.57	-0.3
3,959,407	-		PS417_18175	0.57	-1.6
3,959,592	+		PS417_18175	0.72	+1.3
3,959,592	+		PS417_18175	0.72	+0.9
3,959,593	-		PS417_18175	0.72	+0.0
3,959,593	-		PS417_18175	0.72	+0.4
3,959,593	-				-0.9
3,959,640	-		PS417_18175	0.76	-0.4
3,959,960	-				-1.1
3,960,000	-				-1.4
3,960,029	+				-0.4
3,960,029	+				+1.0
3,960,030	-				+0.6
3,960,080	+				-0.5
3,960,547	-		PS417_18180	0.41	-0.3
3,960,633	-		PS417_18180	0.47	-0.9
3,960,633	-		PS417_18180	0.47	-0.2
3,960,876	-		PS417_18180	0.64	+0.1
3,960,876	-		PS417_18180	0.64	-1.0
3,960,975	+		PS417_18180	0.71	+1.2
3,960,976	-		PS417_18180	0.71	-0.1
3,960,976	-		PS417_18180	0.71	-1.3
3,961,032	-		PS417_18180	0.75	-2.4
3,961,046	+		PS417_18180	0.76	-1.9
3,961,046	+		PS417_18180	0.76	-2.3
3,961,088	+		PS417_18180	0.78	-0.0
3,961,088	+		PS417_18180	0.78	-1.6
3,961,089	-				+2.7
3,961,251	-		PS417_18180	0.90	-0.9
3,961,255	-				-0.2
3,961,583	+				-0.2
3,961,669	+				+0.5
3,961,670	-				+0.7
3,961,876	+				-0.2
3,961,877	-		PS417_18185	0.29	-0.5
3,962,074	+		PS417_18185	0.52	-0.2
3,962,074	+		PS417_18185	0.52	-0.1
3,962,074	+		PS417_18185	0.52	+0.4
3,962,075	-		PS417_18185	0.52	-0.5
3,962,095	+		PS417_18185	0.55	+1.3