Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01800 and PS417_01805 are separated by 219 nucleotides PS417_01805 and PS417_01810 are separated by 162 nucleotides
PS417_01800: PS417_01800 - amino acid ABC transporter substrate-binding protein, at 402,032 to 402,832
_01800
PS417_01805: PS417_01805 - amino acid ABC transporter substrate-binding protein, at 403,052 to 403,849
_01805
PS417_01810: PS417_01810 - ABC transporter permease, at 404,012 to 404,971
_01810
Position (kb) 403
404 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 402.063 kb on + strand at 402.063 kb on + strand at 402.161 kb on + strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.614 kb on + strand, within PS417_01800 at 402.728 kb on - strand, within PS417_01800 at 402.773 kb on + strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.839 kb on + strand at 402.848 kb on - strand at 402.929 kb on + strand at 402.930 kb on - strand at 402.930 kb on - strand at 402.930 kb on - strand at 403.025 kb on + strand at 403.025 kb on + strand at 403.026 kb on - strand at 403.026 kb on - strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.028 kb on - strand at 403.178 kb on + strand, within PS417_01805 at 403.179 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.551 kb on - strand at 403.551 kb on - strand, within PS417_01805 at 403.590 kb on + strand, within PS417_01805 at 403.591 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.638 kb on + strand, within PS417_01805 at 403.639 kb on - strand, within PS417_01805 at 403.677 kb on - strand, within PS417_01805 at 403.734 kb on - strand, within PS417_01805 at 403.790 kb on + strand at 404.087 kb on + strand at 404.087 kb on + strand at 404.088 kb on - strand at 404.088 kb on - strand at 404.091 kb on - strand at 404.091 kb on - strand at 404.112 kb on - strand, within PS417_01810 at 404.142 kb on - strand, within PS417_01810 at 404.142 kb on - strand, within PS417_01810 at 404.509 kb on + strand, within PS417_01810 at 404.510 kb on - strand, within PS417_01810 at 404.517 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.619 kb on - strand, within PS417_01810 at 404.619 kb on - strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.774 kb on - strand, within PS417_01810 at 404.775 kb on + strand, within PS417_01810 at 404.776 kb on - strand, within PS417_01810
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 402,063 + -0.7 402,063 + +2.5 402,161 + PS417_01800 0.16 -0.3 402,162 - PS417_01800 0.16 -0.7 402,162 - PS417_01800 0.16 -0.8 402,162 - PS417_01800 0.16 +0.9 402,162 - PS417_01800 0.16 -0.8 402,162 - PS417_01800 0.16 +0.2 402,162 - +0.5 402,598 + PS417_01800 0.71 -2.3 402,598 + PS417_01800 0.71 +0.9 402,598 + PS417_01800 0.71 -0.8 402,614 + PS417_01800 0.73 +1.0 402,728 - PS417_01800 0.87 +1.5 402,773 + -0.4 402,774 - -0.8 402,774 - -0.6 402,774 - +1.8 402,774 - -3.3 402,839 + -0.5 402,848 - -1.7 402,929 + +1.5 402,930 - +3.7 402,930 - +0.8 402,930 - -0.1 403,025 + +1.3 403,025 + +0.1 403,026 - +1.6 403,026 - +0.4 403,027 + -0.8 403,027 + -1.6 403,027 + -0.3 403,027 + +0.8 403,028 - +0.0 403,178 + PS417_01805 0.16 +0.0 403,179 - PS417_01805 0.16 +0.4 403,458 - PS417_01805 0.51 -1.0 403,458 - PS417_01805 0.51 +0.5 403,458 - PS417_01805 0.51 -1.6 403,458 - PS417_01805 0.51 +3.0 403,458 - PS417_01805 0.51 +1.0 403,458 - PS417_01805 0.51 +1.5 403,460 - PS417_01805 0.51 +0.8 403,460 - PS417_01805 0.51 -0.0 403,460 - PS417_01805 0.51 +0.6 403,460 - PS417_01805 0.51 +0.8 403,550 + PS417_01805 0.62 +0.3 403,550 + PS417_01805 0.62 -0.4 403,551 - +0.9 403,551 - PS417_01805 0.63 -0.1 403,590 + PS417_01805 0.67 -0.8 403,591 - PS417_01805 0.68 +0.7 403,632 - PS417_01805 0.73 +0.5 403,632 - PS417_01805 0.73 -1.3 403,632 - PS417_01805 0.73 +0.8 403,638 + PS417_01805 0.73 -2.2 403,639 - PS417_01805 0.74 +0.0 403,677 - PS417_01805 0.78 +0.8 403,734 - PS417_01805 0.85 +2.2 403,790 + +0.7 404,087 + +0.8 404,087 + +0.3 404,088 - +0.2 404,088 - +0.4 404,091 - -0.3 404,091 - -4.0 404,112 - PS417_01810 0.10 -1.4 404,142 - PS417_01810 0.14 +0.7 404,142 - PS417_01810 0.14 +0.1 404,509 + PS417_01810 0.52 -1.3 404,510 - PS417_01810 0.52 +1.1 404,517 + PS417_01810 0.53 -1.2 404,618 + PS417_01810 0.63 -0.1 404,618 + PS417_01810 0.63 -1.0 404,618 + PS417_01810 0.63 -1.3 404,618 + PS417_01810 0.63 +0.5 404,619 - PS417_01810 0.63 -1.1 404,619 - PS417_01810 0.63 +1.4 404,773 + PS417_01810 0.79 -1.1 404,773 + PS417_01810 0.79 -1.5 404,774 - PS417_01810 0.79 +0.2 404,775 + PS417_01810 0.79 +0.3 404,776 - PS417_01810 0.80 -0.3
Or see this region's nucleotide sequence