Experiment: JP1 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01730 and PS417_01735 are separated by 71 nucleotides PS417_01735 and PS417_01745 are separated by 981 nucleotides
PS417_01730: PS417_01730 - histidine ABC transporter substrate-binding protein, at 384,068 to 385,033
_01730
PS417_01735: PS417_01735 - ABC transporter permease, at 385,105 to 385,956
_01735
PS417_01745: PS417_01745 - histidine ammonia-lyase, at 386,938 to 388,446
_01745
Position (kb) 385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 384.243 kb on - strand, within PS417_01730 at 384.310 kb on + strand, within PS417_01730 at 384.425 kb on + strand, within PS417_01730 at 384.425 kb on + strand, within PS417_01730 at 384.425 kb on + strand, within PS417_01730 at 384.437 kb on + strand, within PS417_01730 at 384.438 kb on - strand, within PS417_01730 at 384.497 kb on - strand, within PS417_01730 at 384.515 kb on + strand, within PS417_01730 at 384.516 kb on - strand, within PS417_01730 at 384.516 kb on - strand, within PS417_01730 at 384.563 kb on + strand, within PS417_01730 at 384.563 kb on + strand, within PS417_01730 at 384.639 kb on - strand at 384.639 kb on - strand, within PS417_01730 at 384.695 kb on + strand, within PS417_01730 at 384.695 kb on + strand, within PS417_01730 at 384.695 kb on + strand, within PS417_01730 at 384.725 kb on + strand, within PS417_01730 at 384.726 kb on - strand, within PS417_01730 at 385.032 kb on - strand at 385.032 kb on - strand at 385.104 kb on + strand at 385.177 kb on + strand at 385.177 kb on + strand at 385.178 kb on - strand at 385.178 kb on - strand at 385.352 kb on + strand, within PS417_01735 at 385.352 kb on + strand, within PS417_01735 at 385.352 kb on + strand, within PS417_01735 at 385.528 kb on + strand, within PS417_01735 at 385.594 kb on + strand, within PS417_01735 at 385.925 kb on - strand at 385.958 kb on + strand at 385.958 kb on + strand at 386.356 kb on + strand at 386.440 kb on - strand at 386.579 kb on - strand at 386.736 kb on + strand at 386.736 kb on + strand at 386.737 kb on - strand at 386.737 kb on - strand at 386.737 kb on - strand at 386.922 kb on + strand at 386.922 kb on + strand at 386.923 kb on - strand at 386.923 kb on - strand at 386.931 kb on + strand at 386.931 kb on + strand at 386.931 kb on + strand at 386.931 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JP1 MOI 1 remove 384,243 - PS417_01730 0.18 -0.5 384,310 + PS417_01730 0.25 -0.8 384,425 + PS417_01730 0.37 +0.3 384,425 + PS417_01730 0.37 -1.8 384,425 + PS417_01730 0.37 +0.1 384,437 + PS417_01730 0.38 -0.2 384,438 - PS417_01730 0.38 -0.3 384,497 - PS417_01730 0.44 +0.8 384,515 + PS417_01730 0.46 -0.7 384,516 - PS417_01730 0.46 +0.9 384,516 - PS417_01730 0.46 +0.4 384,563 + PS417_01730 0.51 -1.3 384,563 + PS417_01730 0.51 -0.1 384,639 - +0.5 384,639 - PS417_01730 0.59 -0.0 384,695 + PS417_01730 0.65 -2.0 384,695 + PS417_01730 0.65 -0.1 384,695 + PS417_01730 0.65 +0.5 384,725 + PS417_01730 0.68 -0.6 384,726 - PS417_01730 0.68 -0.5 385,032 - +0.9 385,032 - +0.0 385,104 + -0.0 385,177 + +0.1 385,177 + -1.1 385,178 - -0.3 385,178 - +1.5 385,352 + PS417_01735 0.29 -0.6 385,352 + PS417_01735 0.29 -1.0 385,352 + PS417_01735 0.29 -1.8 385,528 + PS417_01735 0.50 -2.1 385,594 + PS417_01735 0.57 -1.7 385,925 - +0.1 385,958 + +1.1 385,958 + +1.2 386,356 + -2.9 386,440 - +0.9 386,579 - +1.2 386,736 + +0.6 386,736 + -0.5 386,737 - -0.5 386,737 - +1.8 386,737 - -0.6 386,922 + -1.6 386,922 + -0.7 386,923 - -0.2 386,923 - -1.1 386,931 + -0.3 386,931 + -1.3 386,931 + +1.1 386,931 + +1.9
Or see this region's nucleotide sequence