Strain Fitness in Pseudomonas simiae WCS417 around PS417_16290

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
3,568,325	+		PS417_16285	0.81	-0.2
3,568,325	+		PS417_16285	0.81	-0.8
3,568,326	-		PS417_16285	0.81	-0.7
3,568,338	-		PS417_16285	0.82	-0.0
3,568,431	+				+0.2
3,568,463	-				-1.5
3,568,463	-				-0.2
3,568,489	+				+0.8
3,568,489	+				-2.4
3,568,489	+				+0.8
3,568,518	-				-1.8
3,568,636	+				-0.3
3,568,637	-				+1.6
3,568,662	+				+1.1
3,568,663	-				-0.7
3,568,776	-				-2.1
3,568,848	+				-0.4
3,568,866	-				+1.8
3,568,866	-				-0.5
3,568,908	-				+0.1
3,568,909	-				-1.2
3,568,943	+				+1.4
3,568,954	+				+0.1
3,569,013	-				-1.2
3,569,074	+				+0.2
3,569,090	+				+0.5
3,569,090	+				+0.8
3,569,091	-				+1.2
3,569,125	-				-2.2
3,569,125	-				-0.1
3,569,304	+				-1.6
3,569,307	+				-0.2
3,569,307	+				-1.3
3,569,308	-				+0.2
3,569,336	+		PS417_16290	0.11	-0.1
3,569,387	+		PS417_16290	0.25	+1.5
3,569,404	-		PS417_16290	0.29	-1.2
3,569,404	-		PS417_16290	0.29	-0.8
3,569,519	+				+1.8
3,569,519	+		PS417_16290	0.59	+0.2
3,569,520	-		PS417_16290	0.59	-0.0
3,569,520	-		PS417_16290	0.59	-0.5
3,569,535	-		PS417_16290	0.63	+1.6
3,569,535	-		PS417_16290	0.63	+0.3
3,569,535	-		PS417_16290	0.63	-0.0
3,569,598	+		PS417_16290	0.80	-0.1
3,569,598	+		PS417_16290	0.80	+1.0
3,569,659	+				+1.1
3,569,668	-				+3.4
3,569,674	-				-1.7
3,569,724	+				+0.4
3,569,774	+				-1.8
3,569,853	+				-0.6
3,569,856	+				+0.0
3,569,947	+		PS417_16295	0.28	-2.7
3,569,947	+		PS417_16295	0.28	-0.6
3,569,949	+		PS417_16295	0.28	-1.9
3,569,949	+		PS417_16295	0.28	-1.8
3,569,949	+		PS417_16295	0.28	+0.1
3,569,949	+		PS417_16295	0.28	-2.4
3,569,949	+		PS417_16295	0.28	+2.0
3,569,949	+		PS417_16295	0.28	+1.4
3,569,989	-		PS417_16295	0.40	-1.3
3,570,040	-				+1.4
3,570,040	-		PS417_16295	0.56	-1.3
3,570,063	-		PS417_16295	0.62	+0.7
3,570,181	-				-0.4
3,570,209	-				-1.6
3,570,312	-				+0.4
3,570,318	-				-2.1
3,570,365	-				-0.7
3,570,365	-				-0.5
3,570,383	-				-2.9
3,570,425	-				-0.9
3,570,484	+				+1.8
3,570,535	+				-0.6
3,570,535	+				-0.2
3,570,536	-				+0.7