Strain Fitness in Pseudomonas simiae WCS417 around PS417_16285

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
3,566,718	+				-0.6
3,566,730	-				+0.1
3,566,731	+				+1.4
3,566,731	+				+0.4
3,566,731	+				+0.3
3,566,731	+				+0.1
3,566,731	+				-1.5
3,566,735	+				-1.0
3,566,735	+				+0.5
3,566,736	-				+0.4
3,566,750	-				+1.7
3,566,750	-				+0.9
3,566,750	-				+0.8
3,566,750	-				-1.1
3,566,861	+				+1.2
3,566,890	+				-1.4
3,566,909	+				-1.9
3,567,099	+		PS417_16275	0.47	-1.1
3,567,100	-		PS417_16275	0.47	-0.5
3,567,128	+		PS417_16275	0.56	-2.9
3,567,240	-				-1.5
3,567,306	+				+0.6
3,567,307	-				-1.2
3,567,307	-				-1.6
3,567,307	-				+0.1
3,567,323	+				-1.6
3,567,388	+				-0.9
3,567,388	+				-0.0
3,567,388	+				-0.6
3,567,495	+				+0.8
3,567,495	+				-0.9
3,567,495	+				+0.6
3,567,496	-				-0.2
3,567,796	+		PS417_16285	0.19	+0.4
3,567,796	+		PS417_16285	0.19	+0.4
3,567,796	+		PS417_16285	0.19	+1.1
3,567,797	-		PS417_16285	0.19	-0.9
3,567,797	-		PS417_16285	0.19	-0.5
3,567,884	-		PS417_16285	0.29	-0.8
3,567,884	-				-1.2
3,567,885	+				+1.1
3,567,886	-				-0.2
3,567,908	+		PS417_16285	0.32	-0.6
3,567,909	-		PS417_16285	0.32	-0.7
3,567,909	-		PS417_16285	0.32	+2.9
3,567,913	-		PS417_16285	0.33	+0.8
3,567,913	-		PS417_16285	0.33	+0.5
3,567,913	-				+0.8
3,568,004	+		PS417_16285	0.43	+2.5
3,568,325	+		PS417_16285	0.81	-0.2
3,568,325	+		PS417_16285	0.81	-0.8
3,568,326	-		PS417_16285	0.81	-0.7
3,568,338	-		PS417_16285	0.82	-0.0
3,568,431	+				+0.2
3,568,463	-				-1.5
3,568,463	-				-0.2
3,568,489	+				+0.8
3,568,489	+				-2.4
3,568,489	+				+0.8
3,568,518	-				-1.8
3,568,636	+				-0.3
3,568,637	-				+1.6
3,568,662	+				+1.1
3,568,663	-				-0.7
3,568,776	-				-2.1
3,568,848	+				-0.4
3,568,866	-				+1.8
3,568,866	-				-0.5
3,568,908	-				+0.1
3,568,909	-				-1.2
3,568,943	+				+1.4
3,568,954	+				+0.1
3,569,013	-				-1.2
3,569,074	+				+0.2
3,569,090	+				+0.5
3,569,090	+				+0.8
3,569,091	-				+1.2
3,569,125	-				-2.2
3,569,125	-				-0.1
3,569,304	+				-1.6
3,569,307	+				-0.2
3,569,307	+				-1.3
3,569,308	-				+0.2
3,569,336	+		PS417_16290	0.11	-0.1
3,569,387	+		PS417_16290	0.25	+1.5
3,569,404	-		PS417_16290	0.29	-1.2
3,569,404	-		PS417_16290	0.29	-0.8