Strain Fitness in Pseudomonas simiae WCS417 around PS417_16275

Experiment: JP1 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JP1 MOI 1
3,566,095	+		PS417_16270	0.37	+1.3
3,566,096	-				+0.4
3,566,146	+		PS417_16270	0.44	+0.7
3,566,147	-		PS417_16270	0.44	+0.9
3,566,194	+		PS417_16270	0.51	+0.4
3,566,195	-		PS417_16270	0.51	-0.5
3,566,332	+		PS417_16270	0.69	-1.3
3,566,350	-		PS417_16270	0.71	-0.1
3,566,353	+		PS417_16270	0.72	+0.1
3,566,497	-				+0.8
3,566,622	-				-0.2
3,566,718	+				-0.6
3,566,730	-				+0.1
3,566,731	+				+1.4
3,566,731	+				+0.4
3,566,731	+				+0.3
3,566,731	+				+0.1
3,566,731	+				-1.5
3,566,735	+				-1.0
3,566,735	+				+0.5
3,566,736	-				+0.4
3,566,750	-				+1.7
3,566,750	-				+0.9
3,566,750	-				+0.8
3,566,750	-				-1.1
3,566,861	+				+1.2
3,566,890	+				-1.4
3,566,909	+				-1.9
3,567,099	+		PS417_16275	0.47	-1.1
3,567,100	-		PS417_16275	0.47	-0.5
3,567,128	+		PS417_16275	0.56	-2.9
3,567,240	-				-1.5
3,567,306	+				+0.6
3,567,307	-				-1.2
3,567,307	-				-1.6
3,567,307	-				+0.1
3,567,323	+				-1.6
3,567,388	+				-0.9
3,567,388	+				-0.0
3,567,388	+				-0.6
3,567,495	+				+0.8
3,567,495	+				-0.9
3,567,495	+				+0.6
3,567,496	-				-0.2
3,567,796	+		PS417_16285	0.19	+0.4
3,567,796	+		PS417_16285	0.19	+0.4
3,567,796	+		PS417_16285	0.19	+1.1
3,567,797	-		PS417_16285	0.19	-0.9
3,567,797	-		PS417_16285	0.19	-0.5
3,567,884	-		PS417_16285	0.29	-0.8
3,567,884	-				-1.2
3,567,885	+				+1.1
3,567,886	-				-0.2
3,567,908	+		PS417_16285	0.32	-0.6
3,567,909	-		PS417_16285	0.32	-0.7
3,567,909	-		PS417_16285	0.32	+2.9
3,567,913	-		PS417_16285	0.33	+0.8
3,567,913	-		PS417_16285	0.33	+0.5
3,567,913	-				+0.8
3,568,004	+		PS417_16285	0.43	+2.5